View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12586_high_1 (Length: 401)
Name: NF12586_high_1
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 34843555 - 34843929
Alignment:
| Q |
17 |
actaacctaacccgttctttgcttgtgttattttattttaaattatatgttatttacaccctatgtatgaaagcagtgaatattgnnnnnnnngggtaca |
116 |
Q |
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| T |
34843555 |
actaacctagcccgttctttgcttgtgttattttattttaaattatatgttatttacaccctatgtatgaaagcagtgaatata-ttttttttgggtaca |
34843653 |
T |
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| Q |
117 |
a-gaagcggtgattcttagtgtttgatttgatatggataatgactagatgcatgtatagctcaatttggtttggtactatgatctatgtgcaaacataag |
215 |
Q |
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| T |
34843654 |
aagaagcggtgattcttagtgtttgatttgatgtggataatgactagatgcatgtatagctcaatttggtttggtactatgatctatgtgcaaacataag |
34843753 |
T |
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| Q |
216 |
caaattagtattgtgcttaagtttcaattaattcaattttatacgcttttatatataccttgcaagtggagtgtaaaaagctttttggtacctcaaagag |
315 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34843754 |
caaattagtattgtgctcaagtttaaattaattcaattttatacgcttttatatataccttgcaagtggagtgtaaaaagc-ttttggtacctcaaagat |
34843852 |
T |
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| Q |
316 |
aatatcttaatttccctccaaatctttactatcaatattagcttagtcgccaattctcaacggctgcatgttcttct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34843853 |
aatatcttaatttccctccaaatctttactatcaatattagcttagtcaccaattctcaacggctgcatgttcttct |
34843929 |
T |
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