View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12586_high_9 (Length: 244)
Name: NF12586_high_9
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_high_9 |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 37129522 - 37129745
Alignment:
| Q |
19 |
agtagtgttgttgtatgtactatcaagttatagttggagcaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgt |
118 |
Q |
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| T |
37129522 |
agtagtgttgttgtatgtactatcaagtta--gttggaacaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgt |
37129619 |
T |
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| Q |
119 |
tgctgcaaaacatgttgcttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgg |
218 |
Q |
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| T |
37129620 |
tgcggcaaaacatgttgcttgcatacagaaggagagacatgctctccttgagttgaaggcaagctttgtgttggatgactctaaccttttgcaatcttgg |
37129719 |
T |
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| Q |
219 |
gacagtaaaagtgatggttgttgtgc |
244 |
Q |
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| T |
37129720 |
gacagtaaaagtgatggttgctgtgc |
37129745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 37136770 - 37136901
Alignment:
| Q |
113 |
agctgttgctgcaaaacatgttgcttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgcct |
212 |
Q |
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| T |
37136770 |
agctgttgctgaaaaacatgttggttgcatagagaaggagagacatgctctccttgagttgaaggcaagccttgtcgtcgaagatacttaccttttgcct |
37136869 |
T |
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| Q |
213 |
tcttgggacagtaaaagtgatggttgttgtgc |
244 |
Q |
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| T |
37136870 |
acctgggatagtaagagtgattgttgttgtgc |
37136901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 38745420 - 38745527
Alignment:
| Q |
137 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
236 |
Q |
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| T |
38745420 |
ttgcatagagaaggagagacatgctctccttgagttgaagtcaggtcttgtgttggatgacacttaccttttaccttcttgggacactaagagtgatgat |
38745519 |
T |
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| Q |
237 |
tgttgtgc |
244 |
Q |
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| T |
38745520 |
tgttgtgc |
38745527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 37162281 - 37162476
Alignment:
| Q |
49 |
tagttggagcaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgctgcaaaacatgttgc------------ |
136 |
Q |
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| T |
37162281 |
tagttggagcaatctttgttctgttgcagttcggctttcttttgtccaactattatggagctgtgg---ttgatgcaaaacatgttgcctctgtttctgg |
37162377 |
T |
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| Q |
137 |
---ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtga |
232 |
Q |
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| T |
37162378 |
tggttgtatagagaaggagagacatgctctccttgagttgaaggccagccttgtgttggatgatgctaaccttttgtctacttgggacagtaagagtga |
37162476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 37143936 - 37144043
Alignment:
| Q |
137 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
236 |
Q |
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| T |
37143936 |
ttgcaaagagaatgagagacatgctctccttgagctgaaggaaagcatggtgttatataacacttctcttttgcctacttgggacagtaagattgatggt |
37144035 |
T |
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| Q |
237 |
tgttgtgc |
244 |
Q |
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| T |
37144036 |
tgttgtgc |
37144043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 188
Target Start/End: Complemental strand, 35145138 - 35144999
Alignment:
| Q |
49 |
tagttggagcaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgctgcaaaacatgtt------gcttgcat |
142 |
Q |
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| T |
35145138 |
tagttggaacaatctatgtattgttgcagttagagcttcttttgtccaactattgtggagttgta------gttgcaaaacatgttggtttaggttgcat |
35145045 |
T |
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| Q |
143 |
agagaaggagagacatgctctccttgtgttgaaggcaagccttgtg |
188 |
Q |
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| T |
35145044 |
agagaaggagagacatggtctcctacagttgaaggctggccttgtg |
35144999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 3025396 - 3025289
Alignment:
| Q |
137 |
ttgcatagagaaggagagacatgctctccttgtgttgaaggcaagccttgtgttggatgactctaaccttttgccttcttgggacagtaaaagtgatggt |
236 |
Q |
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| T |
3025396 |
ttgcatagagaaggagagacaagcactccttgagttgaagtcaggtcttgtgttggataacacttaccttttaccttcttgggacagtaagagtgatgat |
3025297 |
T |
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| Q |
237 |
tgttgtgc |
244 |
Q |
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| T |
3025296 |
tgttgtgc |
3025289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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