View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12586_low_13 (Length: 214)
Name: NF12586_low_13
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 5395903 - 5395717
Alignment:
| Q |
16 |
atatttagcattttccttaaatgttatatatctattttgccaagtgagcttgttattgatttgttcgtttcagttccagttcgtgactcttttgtgactt |
115 |
Q |
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| T |
5395903 |
atatttagcattttccttaaatgttatatatctattttgccaagtgagcttgttattgatttgttcgtttcagttccagttcgtgactcttttgtgactt |
5395804 |
T |
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| Q |
116 |
gttaattatagaggcaatatgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttgaaact |
202 |
Q |
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| T |
5395803 |
gttaattatagaggcaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaact |
5395717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 5391049 - 5390972
Alignment:
| Q |
125 |
agaggcaatatgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttgaaact |
202 |
Q |
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| T |
5391049 |
agagacaatatgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaact |
5390972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 50829826 - 50829759
Alignment:
| Q |
134 |
atgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttgaaact |
202 |
Q |
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| T |
50829826 |
atgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaact |
50829759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 50846027 - 50846094
Alignment:
| Q |
134 |
atgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttgaaact |
202 |
Q |
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| T |
50846027 |
atgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaact |
50846094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 26245477 - 26245544
Alignment:
| Q |
135 |
tgcaggcgagtgataggtttaacataaattctcaacttgaacatcttcaagctaaatatgttgaaact |
202 |
Q |
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| T |
26245477 |
tgcaggcgagtgataggtttaacataaattcgcaacttgaacatcttcaagctaaatacgttggaact |
26245544 |
T |
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