View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12586_low_2 (Length: 390)
Name: NF12586_low_2
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 40402892 - 40402648
Alignment:
| Q |
19 |
atacgtacccaaataactttgnnnnnnngttcacgttacgtatatacccaaataatttatt-----gatgatgtgatatgagaaagagataaaaagaaaa |
113 |
Q |
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| T |
40402892 |
atacgtacccaaataactttgtttttttgttcacgttacgtatatacccaaataatttattttattgatgatgtgatatgagaaagagataaaaagaaaa |
40402793 |
T |
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| Q |
114 |
ttatggattaaatgagtgttagaaatttaagggtgttcaaatataagaactcttaatttatatcccaaccaaacttagattattgtagttttttctcacc |
213 |
Q |
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| T |
40402792 |
ttatgtattaaatgagtgttagaaatttaagggtgttcaaatataagaactcttaatttatatcccaaccaaacttagattattgtagttttttctcact |
40402693 |
T |
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| Q |
214 |
ggaaacaaaagagttaaaatcattactatagttaaaatctatgtt |
258 |
Q |
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| T |
40402692 |
ggaaacaaaagagttaaaatcattactatagttaaaatctgtgtt |
40402648 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 28846787 - 28846711
Alignment:
| Q |
290 |
acccaaattgacatcagagatattcaaacc-gagacatcgaggaggagcac-ctctcaagtcccaaatcaataccac |
364 |
Q |
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| T |
28846787 |
acccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccac |
28846711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 51954212 - 51954134
Alignment:
| Q |
288 |
ccacccaaattgacatcagagatattcaaacc-gagacatcgaggaggagca-cctctcaagtcccaaatcaataccac |
364 |
Q |
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| T |
51954212 |
ccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaatgccac |
51954134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 24481681 - 24481601
Alignment:
| Q |
285 |
aatccacccaaattgacatcagagatattcaaaccgagacatcgaggaggagcac-ctctcaagtcccaaatcaataccac |
364 |
Q |
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| T |
24481681 |
aatccacctaaattgacatatgagataatcgaactgagacgtcgagaaaaagcacactctcaagtcccaaaccaataccac |
24481601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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