View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12586_low_4 (Length: 355)
Name: NF12586_low_4
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 243804 - 243977
Alignment:
| Q |
19 |
ctcataatatggtaattaaagtgtttatgctcataaattagtgaatttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaat |
118 |
Q |
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| T |
243804 |
ctcataatatggtaattaaagtgtttatgctcataaattagtgaatttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaat |
243903 |
T |
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| Q |
119 |
ttggtttatgatagaggttgacaaaaacattccctcttaatttccaacttttttctatattccattccacacac |
192 |
Q |
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| T |
243904 |
ttggtttatgatagaggttgacaaaaacattccctcttaatttccaacttttttctatattccattccacacac |
243977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 244008 - 244131
Alignment:
| Q |
222 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244008 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
244107 |
T |
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| Q |
322 |
acacaagagtaaatcatattcatc |
345 |
Q |
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| T |
244108 |
acacaagagtaaatcatattcatc |
244131 |
T |
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