View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12586_low_8 (Length: 254)
Name: NF12586_low_8
Description: NF12586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12586_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37129728 - 37129966
Alignment:
| Q |
1 |
aagtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttaga |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129728 |
aagtgatggttgctgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttaga |
37129827 |
T |
|
| Q |
101 |
ggcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129828 |
ggcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaatcgaatgtcaaacgataattttccagaattatttggtt |
37129927 |
T |
|
| Q |
201 |
cactaagaaacttgagattccttgacctccaaagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37129928 |
cactaagaaacttgagattccttgacctccaaagttcat |
37129966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 37144029 - 37144256
Alignment:
| Q |
4 |
tgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagaggc |
103 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||| | |
|
|
| T |
37144029 |
tgatggttgttgtgcatgggaaggaatcacgtgcagcaatcaaactggtcatgttgaaattcttgatctaaacggcgattagtttggtccttttagagac |
37144128 |
T |
|
| Q |
104 |
aagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcac |
203 |
Q |
| |
|
||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || | |
|
|
| T |
37144129 |
aagatcaacgcatcattgattaatttgcagcatttaaagtatttgaatctcagttttaatcagatgtcaaacaataattttccagaattatttggctctc |
37144228 |
T |
|
| Q |
204 |
taagaaacttgagattccttgacctcca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37144229 |
taagaaacttgagattccttgacctcca |
37144256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 37136885 - 37137112
Alignment:
| Q |
2 |
agtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagag |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||| ||| |
|
|
| T |
37136885 |
agtgattgttgttgtgcatgggaaggaatcacatgtagcaatcaaactggccatgttgaaatgcttgatctaaatggcgatcagtttggtccttttcgag |
37136984 |
T |
|
| Q |
102 |
gcaagatcaacagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttc |
201 |
Q |
| |
|
| |||| |||| |||| |||||||||||||| |||||||||||||||| ||| || ||| | ||||| | || ||||||||||||||||||| |
|
|
| T |
37136985 |
gtgagattaacatatcattgattgatttgcagcatttaaagtatttgaacctctcttggaatctgttaacaaacagtgatattccagaattatttggttc |
37137084 |
T |
|
| Q |
202 |
actaagaaacttgagattccttgacctc |
229 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
37137085 |
tctaagcaacttgagattccttgacctc |
37137112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 37162478 - 37162706
Alignment:
| Q |
11 |
tgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagaggcaagatca |
110 |
Q |
| |
|
|||||||||||| ||| | | |||||||||||||||||||| |||||||||| |||| |||||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
37162478 |
tgttgtgcatggaaagaagtcggttgtagcaatcaaactggccatgttgaaaagcttcatctaaacggttttcagtttggtccttttcgaggcaagatca |
37162577 |
T |
|
| Q |
111 |
acagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaagaaa |
210 |
Q |
| |
|
||| |||| |||| || |||| |||||||||||||||| ||| | | | | | |||||| || |||| ||||||||||||||||| |||| || |
|
|
| T |
37162578 |
acacatcattgatggagttgcgacatttaaagtatttgaacctcggatggagtacgttttcaaacaatgatttcccagaattatttggttctttaagcaa |
37162677 |
T |
|
| Q |
211 |
cttgagattccttgacctccaaagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37162678 |
cttgagattccttgacctccaaagttcat |
37162706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 38745511 - 38745584
Alignment:
| Q |
2 |
agtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaa |
75 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38745511 |
agtgatgattgttgtgcatgggaaggaattggttgtaggaatcaaactggccatgttgaaatacttgatctaaa |
38745584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 38745627 - 38745731
Alignment:
| Q |
135 |
atttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggttcactaagaaacttgagattccttgacctccaaag |
234 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | |||||| | |||| |||||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
38745627 |
atttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttttctaagaaacttgagatttcttgacctccaagg |
38745726 |
T |
|
| Q |
235 |
ttcat |
239 |
Q |
| |
|
||||| |
|
|
| T |
38745727 |
ttcat |
38745731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 35144926 - 35144858
Alignment:
| Q |
34 |
ttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagagg |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |||| ||||||||| || ||||||| |||| |
|
|
| T |
35144926 |
ttgtagcaatcaaactggccatgttgaagtgcttgatgtaaatggcgatcagtttggtccttttcgagg |
35144858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 3025305 - 3025068
Alignment:
| Q |
2 |
agtgatggttgttgtgcatgggaaggaataggttgtagcaatcaaactggtcatgttgaaatgcttgatctaaacggcgatcaggttattccttttagag |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||| || |||||| || ||||||| || |
|
|
| T |
3025305 |
agtgatgattgttgtgcatgggaaggaattggttgtagcaatgaaactggccatgttgaaatacttgatctaaatggtgatcagtttggtccttttgtag |
3025206 |
T |
|
| Q |
102 |
gcaagatcaa-cagatcagtgattgatttgcagaatttaaagtatttgaatctcagttttaattgaatgtcaaacgataattttccagaattatttggtt |
200 |
Q |
| |
|
|| | ||||| ||| || |||| || |||| | |||||||||||||||| ||||||| ||| | |||||| | |||| |||||||||||||||| |
|
|
| T |
3025205 |
gcgacatcaatgaga-cattgatcgagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggtt |
3025107 |
T |
|
| Q |
201 |
cactaagaaacttgagattccttgacctccaaagttcat |
239 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
3025106 |
ctctaagaaacttgagatttcttgatctccaaggttcat |
3025068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University