View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12587_high_1 (Length: 804)

Name: NF12587_high_1
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12587_high_1
NF12587_high_1
[»] chr5 (15 HSPs)
chr5 (56-655)||(42561969-42562566)
chr5 (190-315)||(29696198-29696323)
chr5 (116-166)||(29688011-29688061)
chr5 (582-634)||(179410-179462)
chr5 (596-648)||(29696602-29696654)
chr5 (582-649)||(9120115-9120182)
chr5 (445-488)||(29688343-29688386)
chr5 (75-158)||(29712599-29712682)
chr5 (76-169)||(29696072-29696165)
chr5 (190-238)||(179026-179074)
chr5 (124-167)||(29261158-29261201)
chr5 (591-661)||(29688490-29688560)
chr5 (446-488)||(29696448-29696490)
chr5 (591-649)||(29712083-29712141)
chr5 (281-326)||(29688185-29688230)
[»] chr4 (64 HSPs)
chr4 (74-173)||(48870400-48870499)
chr4 (74-173)||(48886086-48886185)
chr4 (74-167)||(48875704-48875797)
chr4 (126-655)||(49040788-49041320)
chr4 (74-171)||(50250910-50251007)
chr4 (50-169)||(45372191-45372310)
chr4 (582-652)||(7790432-7790502)
chr4 (582-655)||(7786816-7786889)
chr4 (405-482)||(48863424-48863501)
chr4 (591-659)||(7908663-7908731)
chr4 (591-655)||(48864396-48864460)
chr4 (127-246)||(48898630-48898752)
chr4 (582-649)||(50666667-50666734)
chr4 (582-652)||(7878735-7878805)
chr4 (582-709)||(48853033-48853166)
chr4 (591-725)||(49038444-49038578)
chr4 (582-655)||(7765994-7766067)
chr4 (582-659)||(7771747-7771824)
chr4 (82-171)||(48170700-48170789)
chr4 (591-655)||(45371710-45371774)
chr4 (591-646)||(48147358-48147413)
chr4 (589-659)||(7813836-7813906)
chr4 (194-244)||(48147752-48147802)
chr4 (192-242)||(48735419-48735469)
chr4 (129-171)||(48852576-48852618)
chr4 (591-649)||(49043810-49043868)
chr4 (77-171)||(49044316-49044410)
chr4 (582-659)||(7773457-7773534)
chr4 (74-171)||(37827114-37827211)
chr4 (81-171)||(48705479-48705571)
chr4 (591-655)||(45384528-45384592)
chr4 (591-655)||(48156065-48156129)
chr4 (75-171)||(48891271-48891367)
chr4 (113-168)||(48863126-48863181)
chr4 (195-242)||(50250818-50250865)
chr4 (589-659)||(7800996-7801066)
chr4 (196-246)||(7877727-7877777)
chr4 (582-655)||(7237379-7237452)
chr4 (600-649)||(37826632-37826681)
chr4 (591-648)||(48863626-48863683)
chr4 (198-246)||(7908325-7908373)
chr4 (190-242)||(45384905-45384957)
chr4 (190-238)||(48902924-48902972)
chr4 (116-171)||(33133934-33133989)
chr4 (588-659)||(48870918-48870989)
chr4 (588-659)||(48876222-48876293)
chr4 (588-659)||(48886604-48886675)
chr4 (130-169)||(50672412-50672451)
chr4 (582-655)||(45365856-45365929)
chr4 (82-167)||(47207762-47207847)
chr4 (190-242)||(48705396-48705448)
chr4 (591-639)||(48903316-48903364)
chr4 (195-239)||(49048613-49048657)
chr4 (75-171)||(50668911-50669007)
chr4 (195-255)||(50669052-50669112)
chr4 (196-239)||(7237763-7237806)
chr4 (196-239)||(7771396-7771439)
chr4 (196-239)||(7790081-7790124)
chr4 (591-649)||(49048197-49048255)
chr4 (195-240)||(48852663-48852708)
chr4 (195-240)||(48870539-48870584)
chr4 (195-240)||(48875843-48875888)
chr4 (195-240)||(48886225-48886270)
chr4 (126-171)||(49048704-49048749)
[»] chr1 (19 HSPs)
chr1 (456-651)||(24416006-24416199)
chr1 (79-241)||(24367025-24367190)
chr1 (547-651)||(24367482-24367586)
chr1 (56-315)||(24310023-24310288)
chr1 (258-351)||(24415805-24415898)
chr1 (471-652)||(24340654-24340833)
chr1 (471-652)||(24353019-24353198)
chr1 (405-505)||(24367339-24367439)
chr1 (591-649)||(24310577-24310635)
chr1 (599-652)||(24323139-24323192)
chr1 (591-652)||(24369802-24369863)
chr1 (195-242)||(24340405-24340452)
chr1 (195-242)||(24352770-24352817)
chr1 (286-354)||(24340466-24340534)
chr1 (286-354)||(24352831-24352899)
chr1 (394-501)||(24310370-24310477)
chr1 (56-107)||(24322308-24322359)
chr1 (195-242)||(24369477-24369524)
chr1 (61-154)||(24365193-24365286)
[»] chr6 (6 HSPs)
chr6 (77-171)||(21015667-21015761)
chr6 (75-171)||(21979770-21979866)
chr6 (591-646)||(21016182-21016237)
chr6 (596-655)||(21979264-21979323)
chr6 (597-637)||(14197337-14197377)
chr6 (195-238)||(21015806-21015849)
[»] chr3 (9 HSPs)
chr3 (74-170)||(47452028-47452124)
chr3 (588-648)||(11024146-11024206)
chr3 (588-648)||(11005571-11005631)
chr3 (74-169)||(11015641-11015736)
chr3 (195-238)||(11005994-11006037)
chr3 (195-238)||(11024569-11024612)
chr3 (591-655)||(47451536-47451600)
chr3 (195-238)||(11015557-11015600)
chr3 (591-648)||(11015134-11015191)
[»] chr7 (6 HSPs)
chr7 (591-653)||(48884185-48884247)
chr7 (74-171)||(48883656-48883753)
chr7 (124-167)||(30120435-30120478)
chr7 (596-647)||(30165863-30165914)
chr7 (596-637)||(30130916-30130957)
chr7 (596-649)||(30119910-30119963)
[»] chr8 (9 HSPs)
chr8 (74-171)||(15348720-15348817)
chr8 (591-652)||(15349244-15349305)
chr8 (190-242)||(4031938-4031990)
chr8 (195-246)||(12200304-12200355)
chr8 (195-246)||(12444732-12444783)
chr8 (190-240)||(15348848-15348898)
chr8 (591-640)||(4031577-4031626)
chr8 (591-648)||(12195685-12195742)
chr8 (591-648)||(12440113-12440170)
[»] scaffold0508 (1 HSPs)
scaffold0508 (56-109)||(12156-12209)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 8e-91; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 56 - 655
Target Start/End: Complemental strand, 42562566 - 42561969
Alignment:
Q  56 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcac 155  Q
    ||||||||| ||| || ||||||||||||| ||||||||||||||| | ||||||| || | || || ||||||||||||||||||||| ||||  ||||    
T  42562566 atcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcac 42562467  T
Q  156 aaacaaatacctttgtgttccaattcat-ataaac---atttctatggttttgggtatgaccactcaacagatgattacttggtggtttcattgtgcaat 251  Q
    |||||||||||||||| | || ||| || |||      |||| ||||||||||||||||| ||||||||| ||||||| || ||||||||| | | |  |    
T  42562466 aaacaaatacctttgtct-cctattgattatatttttaatttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaatttcccgt 42562368  T
Q  252 gatcgaattccaaactcagatggtgtgccatctcacttgtggcttttctcattgagagctaatgcatggaaggaatttccgagtactacccatttgcctt 351  Q
    |||| ||||||| ||||||||| ||| | |||||||||||||||||||| ||||||||||| ||  ||||||||| || |  |||| |||||||||||||    
T  42562367 gatcaaattccatactcagatgatgttctatctcacttgtggcttttcttattgagagctactgtgtggaaggaaattgcatgtacaacccatttgcctt 42562268  T
Q  352 tttatagaattgcatcatcctttaatccaaactcagagtttctcttcaatgatgctattcactggttggcttttcgtcacggtatggatgtttatgttat 451  Q
    ||||||  | ||  || |||||   || | |   |||||   |||||||||  |||||||||||||||||| ||||||| | |||  |||   |||||||    
T  42562267 tttatactaatgtctcttccttggttcgacaagtagagtcgttcttcaatggggctattcactggttggctcttcgtcatgatatatatgaccatgttat 42562168  T
Q  452 tgttgcctttcatttaacggaaaggaaacttatagagactcctctcccagttgacgttgactatgattctacactttgtggtttatgggtatttaattta 551  Q
    ||||||||||||||||||||||||||||||| |||||| || ||| ||| ||||  || | ||| |||| | |  ||||||||| |||||     |||||    
T  42562167 tgttgcctttcatttaacggaaaggaaacttctagagattcttcttccaattgatattaattataattccaaaggttgtggtttttgggt-----attta 42562073  T
Q  552 gaggatttttcagtctatggattttgagatatgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttct 651  Q
    |||||||| |||||||||||||||||||  | |||    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  42562072 gaggatttctcagtctatggattttgagggacgataatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 190 - 315
Target Start/End: Original strand, 29696198 - 29696323
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggtttcattgtgcaatgatcgaattccaaactcagatggtgtgccatctcactt 289  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||| | |||| |  | ||| | |||||||||| ||| |||||||||    
T  29696198 atttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatgaaccgagtccgagctcagatggtatgctatctcactt 29696297  T
Q  290 gtggcttttctcattgagagctaatg 315  Q
    | |  |||||||||||||||||||||    
T  29696298 gggaattttctcattgagagctaatg 29696323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 29688011 - 29688061
Alignment:
Q  116 ttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacc 166  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  29688011 ttcaagcctttatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 179410 - 179462
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttgg 634  Q
    ||||| || |||| |||||||||||| ||||||||||||||||||||||||||    
T  179410 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 596 - 648
Target Start/End: Original strand, 29696602 - 29696654
Alignment:
Q  596 atatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    ||||||||||||||| ||||||| ||||| || ||||||||||||||||||||    
T  29696602 atatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 582 - 649
Target Start/End: Original strand, 9120115 - 9120182
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    ||||| || |||| |||||||||||| ||||||||||||||||||| |||||||  || |||||||||    
T  9120115 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 445 - 488
Target Start/End: Original strand, 29688343 - 29688386
Alignment:
Q  445 atgttattgttgcctttcatttaacggaaaggaaacttatagag 488  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  29688343 atgttattgttggatttcatttaacggaaaggaaacttatagag 29688386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 29712682 - 29712599
Alignment:
Q  75 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaa 158  Q
    ||||||||||| ||||||||||||||| | |||  || || |||| | ||||  ||||||||||||||||| ||||||||||||    
T  29712682 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 29712599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 29696072 - 29696165
Alignment:
Q  76 ttaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaataccttt 169  Q
    |||||||||| |||||||| |||||| | ||| | | |   ||||||||||   |||||||||||||||||||| ||||||||| |||||||||    
T  29696072 ttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaataccttt 29696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 179026 - 179074
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    ||||||||||||||||||||||  | |||||||||||||||||| ||||    
T  179026 atttctatggttttgggtatgaggagtcaacagatgattacttgttggt 179074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 29261158 - 29261201
Alignment:
Q  124 tctacctatggaatccatccaccggagttcacaaacaaatacct 167  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  29261158 tctatctatggaatccatcaaccggagtccacaaacaaatacct 29261201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 661
Target Start/End: Original strand, 29688490 - 29688560
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttggt 661  Q
    |||| |||||||||||| || ||||||| ||||| || |||||||| |||||||| |||||| || |||||    
T  29688490 ttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggt 29688560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 29696448 - 29696490
Alignment:
Q  446 tgttattgttgcctttcatttaacggaaaggaaacttatagag 488  Q
    |||||||||||||||||||||||  |||||||||||| |||||    
T  29696448 tgttattgttgcctttcatttaattgaaaggaaacttctagag 29696490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 649
Target Start/End: Complemental strand, 29712141 - 29712083
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    |||| ||||||||||||||| ||||||| |||   || |||||||||||||||||||||    
T  29712141 ttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 29688185 - 29688230
Alignment:
Q  281 atctcacttgtggcttttctcattgagagctaatgcatggaaggaa 326  Q
    |||||||||| ||||||||||||| ||||||||| | |||||||||    
T  29688185 atctcacttggggcttttctcattaagagctaatacgtggaaggaa 29688230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 64)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 48870400 - 48870499
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgt 173  Q
    ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48870400 aattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgt 48870499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 74 - 173
Target Start/End: Original strand, 48886086 - 48886185
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgt 173  Q
    ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48886086 aattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgt 48886185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 48875704 - 48875797
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacct 167  Q
    |||||||||||| || ||||| |||||| ||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48875704 aattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacct 48875797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 126 - 655
Target Start/End: Complemental strand, 49041320 - 49040788
Alignment:
Q  126 tacctatggaatccatccaccggagttcacaaacaaatacctttgtgttccaattcat-ataa---acatttctatggttttgggtatgaccactcaaca 221  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||  | | ||| ||| || |   | |||||||||||||||||||||| |  ||||||    
T  49041320 tacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaat-catgattacttaaatttctatggttttgggtatgatccgtcaaca 49041222  T
Q  222 gatgattacttggtggtttcattgtgcaatgatcgaattccaaactcagatggtgtgccatctcacttgtggcttttctcattgagagctaatgcatgga 321  Q
    |||||||||||| |||||||| | |   ||||| | ||||| ||||||||||   ||| ||| ||||||  | |||||||||||| ||||||||  ||||    
T  49041221 gatgattacttgatggtttcagtatcgtatgatagtattccgaactcagatgacatgctatcccacttggagattttctcattgaaagctaatgtgtgga 49041122  T
Q  322 aggaatttccgagtactacccatttgcctttttatagaa---ttgcatcatcctttaatccaaactcagagtttctcttcaatgatgctattcactggtt 418  Q
    ||||| ||  | |||||| ||||| |||||||| ||| |   | |  || || | | |||| |    ||| |   ||||||| |  |||||||| |||||    
T  49041121 aggaaattgtgggtactatccattggcctttttgtagtaaggtcgtttcctcttattatcccatggtagactcgttcttcaacggggctattcattggtt 49041022  T
Q  419 ggcttttcgtcacggtatggatgtttatgttattgttg-cctttcatttaa-cggaaaggaaacttatagagactcctctcccagttgacgttgactatg 516  Q
    |||||||||||| | |||   ||||||||||||||||| ||||||||||||  ||||||| ||||| ||  ||  |||||||||| |||  ||||  |||    
T  49041021 ggcttttcgtcatgatatatgtgtttatgttattgttgtcctttcatttaataggaaagggaacttctattgatacctctcccagatgatattgaaaatg 49040922  T
Q  517 attctacactttgtggtttatgggtatttaatttagaggatttttcagtctatggattttgagatatgatgcaattgatatatgggtgatggaagaatac 616  Q
    ||||||    | ||| |||||||||||||||     ||||||| ||||||||||| ||| | |  || || |  |||||||||||||||||||||||||     
T  49040921 attctaatgatcgtgatttatgggtatttaa-----aggatttctcagtctatgggtttcgggggatcatacggttgatatatgggtgatggaagaatat 49040827  T
Q  617 aaagtgcattcatcttggactaagactcttgttcttcct 655  Q
      ||||||||||||||||| ||| | |||||| ||||||    
T  49040826 ggagtgcattcatcttggattaaaattcttgtgcttcct 49040788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 50251007 - 50250910
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||||||||||||||||||| |||||||| || || | |  |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  50251007 aattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgt 50250910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 45372310 - 45372191
Alignment:
Q  50 tcccctatcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccgga 149  Q
    ||||| |||| |||| ||||||  |||||||||||||||||||||||||||||| ||||||  |  ||||| | |||| ||||||||||||||||| ||     
T  45372310 tccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggt 45372211  T
Q  150 gttcacaaacaaataccttt 169  Q
    ||||| ||||||||||||||    
T  45372210 gttcagaaacaaataccttt 45372191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 582 - 652
Target Start/End: Original strand, 7790432 - 7790502
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||    
T  7790432 atgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctt 7790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 655
Target Start/End: Original strand, 7786816 - 7786889
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    ||||| ||||||| |||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||    
T  7786816 atgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttcttcct 7786889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 482
Target Start/End: Original strand, 48863424 - 48863501
Alignment:
Q  405 gctattcactggttggcttttcgtcacggtatggatgtttatgttattgttgcctttcatttaacggaaaggaaactt 482  Q
    |||||||| ||||||||||||||||| | ||| | ||||||||||||||||||||||| ||||||||||||| |||||    
T  48863424 gctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacggaaagggaactt 48863501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 591 - 659
Target Start/End: Original strand, 7908663 - 7908731
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttg 7908731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 591 - 655
Target Start/End: Original strand, 48864396 - 48864460
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  48864396 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcct 48864460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 48898630 - 48898752
Alignment:
Q  127 acctatggaatccatccaccggagttcacaaacaaatacctttgtgttcca---attcatataaacatttctatggttttgggtatgaccactcaacaga 223  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | | |   |||  | |  | |||||||||||||||||||||| || | ||||||    
T  48898630 acctatggaatccatccaccggagctcacaaacaaatacctttgtctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 48898729  T
Q  224 tgattacttggtggtttcattgt 246  Q
    ||||||||| ||||||| |||||    
T  48898730 tgattacttagtggttttattgt 48898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 582 - 649
Target Start/End: Original strand, 50666667 - 50666734
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  50666667 atgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 652
Target Start/End: Original strand, 7878735 - 7878805
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    ||||| || |||| |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  7878735 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctt 7878805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 709
Target Start/End: Original strand, 48853033 - 48853166
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttgg------tcccaccgacttcat 675  Q
    ||||| || |||| |||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||| || || |      ||||||  ||| | |    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactactt 48853132  T
Q  676 tttccctatatgttgtacaaagagtggtgatatt 709  Q
    || ||| |||||||||||||||||||||||||||    
T  48853133 ttccccaatatgttgtacaaagagtggtgatatt 48853166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 591 - 725
Target Start/End: Complemental strand, 49038578 - 49038444
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttggtcccaccgacttcattttccctatatgttg 690  Q
    |||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||  || || ||  ||    || | ||| ||||||||||||    
T  49038578 ttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccctacttttcccctatatgttg 49038479  T
Q  691 tacaaagagtggtgatattgtagtaacagatggtt 725  Q
    |||||| |||||| ||||| | | |||||||||||    
T  49038478 tacaaaaagtggtcatattattggaacagatggtt 49038444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 582 - 655
Target Start/End: Original strand, 7765994 - 7766067
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    ||||| ||||||| |||||||||||| |||||||||||||| |||| || ||||||||||| ||||||||||||    
T  7765994 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttcttcct 7766067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 582 - 659
Target Start/End: Original strand, 7771747 - 7771824
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||| || |||||||| |||||||||||| ||||||    
T  7771747 atgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttg 7771824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 48170789 - 48170700
Alignment:
Q  82 gttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||| |||||||| |||||||| ||||||  |  ||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  48170789 gttcctgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgt 48170700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 45371774 - 45371710
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||| |||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  45371774 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcct 45371710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 646
Target Start/End: Complemental strand, 48147413 - 48147358
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactctt 646  Q
    |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  48147413 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 7813836 - 7813906
Alignment:
Q  589 aattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    |||||| ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  7813836 aattgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttctgttg 7813906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 48147802 - 48147752
Alignment:
Q  194 ctatggttttgggtatgaccactcaacagatgattacttggtggtttcatt 244  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  48147802 ctatggttttgggtatgaccagttaacagatgattacttggtggtttcatt 48147752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 48735469 - 48735419
Alignment:
Q  192 ttctatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 48852576 - 48852618
Alignment:
Q  129 ctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgt 48852618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 591 - 649
Target Start/End: Complemental strand, 49043868 - 49043810
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    |||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  49043868 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 49044410 - 49044316
Alignment:
Q  77 taaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||| |||||||||||||||||||||| ||||||  |||| |||     || |||||||||||||||||  ||||||||||||||||||||||||    
T  49044410 taaatgttcatgtagagggtttatatttttgcatcgtgctgcaacaacttatctatggaatccatccactagagttcacaaacaaatacctttgt 49044316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 659
Target Start/End: Complemental strand, 7773534 - 7773457
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    ||||| || |||| |||||||||||| ||||||||||||||||||| ||||||| |||  ||||||||||| ||||||    
T  7773534 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttctgttg 7773457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 37827211 - 37827114
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||||||||||| ||||||||||| |||| |||||   | ||| || | ||||| |||||||||||||||| ||| |||||||||||||||| ||||    
T  37827211 aattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgt 37827114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 48705571 - 48705479
Alignment:
Q  81 ggttcatgtagagggtttatattgttgcattctgcttcaagcctct--acctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||| ||| ||||| ||||||||||| |||| |||||||| |||||  |||| ||||||||||| || ||| |||||||||||||||||||||    
T  48705571 ggttaatgcagaggttttatattgtttcattgtgcttcaaccctctctacctgtggaatccatctactggatttcacaaacaaatacctttgt 48705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 45384592 - 45384528
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||||| ||||||| ||||||||||    
T  45384592 ttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttcct 45384528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 48156129 - 48156065
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||| |||||||||||| | ||||||||||||||||| ||||||||||| |||||||| ||||||    
T  48156129 ttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcct 48156065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 48891271 - 48891367
Alignment:
Q  75 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||||| |||||||||||||||| || | |||||| ||   |||| | ||||  |||||||||||||||| ||| |||||||||||||||||||||    
T  48891271 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgt 48891367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 48863126 - 48863181
Alignment:
Q  113 tgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctt 168  Q
    |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||    
T  48863126 tgcttcaaacatctacctatggaatccatccaccggagctcagaaacaaatacctt 48863181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 659
Target Start/End: Original strand, 7800996 - 7801066
Alignment:
Q  589 aattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    |||||| ||||||||| || |||| |||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  7800996 aattgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttctgttg 7801066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 7877727 - 7877777
Alignment:
Q  196 atggttttgggtatgaccactcaacagatgattacttggtggtttcattgt 246  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 582 - 655
Target Start/End: Complemental strand, 7237452 - 7237379
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    ||||| ||||||  |||||||||||| ||||||||||| ||||||| | ||||||||| |||||||| ||||||    
T  7237452 atgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgtgcttcct 7237379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 600 - 649
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  600 gggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 591 - 648
Target Start/End: Original strand, 48863626 - 48863683
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  48863626 ttgacatatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgt 48863683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 7908325 - 7908373
Alignment:
Q  198 ggttttgggtatgaccactcaacagatgattacttggtggtttcattgt 246  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgt 7908373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 45384957 - 45384905
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    |||||||||||||||||||||| || |||||| ||||||| ||||||||||||    
T  45384957 atttctatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 48902924 - 48902972
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  48902924 atttttatggttttgggtatgaccactcaagagatgattacttgatggt 48902972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 33133989 - 33133934
Alignment:
Q  116 ttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||||| || ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  33133989 ttcaagcttccacctatggaatccattcacccgagttcataaacaaatacctttgt 33133934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 48870918 - 48870989
Alignment:
Q  588 caattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    ||||||| || ||||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||    
T  48870918 caattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttg 48870989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 48876222 - 48876293
Alignment:
Q  588 caattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    ||||||| || ||||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||    
T  48876222 caattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttg 48876293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 588 - 659
Target Start/End: Original strand, 48886604 - 48886675
Alignment:
Q  588 caattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcctgttg 659  Q
    ||||||| || ||||||||| | |||||||||||| | || |||||||| ||||||||||||||| ||||||    
T  48886604 caattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttg 48886675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  130 tatggaatccatccaccggagttcacaaacaaataccttt 169  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 655
Target Start/End: Complemental strand, 45365929 - 45365856
Alignment:
Q  582 atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    ||||| || |||| |||||||||||| ||||||| ||||||| ||| |||||||| |||||||  |||||||||    
T  45365929 atgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcct 45365856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 47207762 - 47207847
Alignment:
Q  82 gttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacct 167  Q
    ||||||||||||| |||||||| ||||||     |||||||  ||||||||||||||||||||| |||||| | | ||||||||||    
T  47207762 gttcatgtagaggctttatatttttgcatcgactttcaagctactacctatggaatccatccactggagttgagagacaaatacct 47207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 48705448 - 48705396
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    ||||| |||||||||| ||||| || |||||||||||||||||||| ||||||    
T  48705448 atttccatggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 639
Target Start/End: Original strand, 48903316 - 48903364
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaa 639  Q
    |||| |||||||||||| ||||||||||||||||||  |||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtt 239  Q
    |||||||||||||||||||  |||||||||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 50668911 - 50669007
Alignment:
Q  75 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||| |||||| |||||||| |||||||| ||||||| | |||| | | ||| | ||||||||||||||||| || |||| ||||| ||||| ||||    
T  50668911 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgt 50669007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 50669052 - 50669112
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttcattgtgcaatgatc 255  Q
    ||||||||||| |||||||  |||| ||||||||||||||| |||||||||| | ||||||    
T  50669052 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatc 50669112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  196 atggttttgggtatgaccactcaacagatgattacttggtggtt 239  Q
    |||||||||| |||||||| |||| |||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  196 atggttttgggtatgaccactcaacagatgattacttggtggtt 239  Q
    |||||||||| |||||||| |||| |||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  196 atggttttgggtatgaccactcaacagatgattacttggtggtt 239  Q
    |||||||||| |||||||| |||| |||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 649
Target Start/End: Complemental strand, 49048255 - 49048197
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    |||| |||||||||||| |||| || ||||||||||| || |||||||||||| |||||    
T  49048255 ttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgtt 49048197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 48852663 - 48852708
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggttt 240  Q
    |||||||||||||||||||  ||||| |||||||||||||| ||||    
T  48852663 tatggttttgggtatgacccgtcaaccgatgattacttggtagttt 48852708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 48870539 - 48870584
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggttt 240  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||    
T  48870539 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48870584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 48875843 - 48875888
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggttt 240  Q
    ||||||||||||||||| || | | |||||||||||||||||||||    
T  48875843 tatggttttgggtatgatcagttagcagatgattacttggtggttt 48875888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 48886225 - 48886270
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggttt 240  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||    
T  48886225 tatggttttgggtatgatcagttaacagatgattacttagtggttt 48886270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 49048749 - 49048704
Alignment:
Q  126 tacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  49048749 tacctttggaatccatccactagagttcacagacaaatacctttgt 49048704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 456 - 651
Target Start/End: Original strand, 24416006 - 24416199
Alignment:
Q  456 gcctttcatttaacggaaaggaaacttatagagactcctctcccagttgacgttgactatgattctacactttgtggtttatgggtatttaatttagagg 555  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||  |||  |||| | |   ||||||  || | |||||||||||||||     ||||    
T  24416006 gcctttcatttaacggaaaggaaacttctagagattcctctcccaagtgatattgaattttggtctacagattatagtttatgggtattta-----gagg 24416100  T
Q  556 atttttcagtctatggattttgagatat---gatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttct 651  Q
    |||| ||||||||||| ||||||| | |   |||  | ||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||    
T  24416101 atttctcagtctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 24367025 - 24367190
Alignment:
Q  79 aaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgttcca- 177  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| | | ||||||||||| ||||||||| ||||||| |  ||| ||||||||  |   |     
T  24367025 aaggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatggaacccatccaccagagttcataggcaattacctttgcctcttaa 24367124  T
Q  178 --attcatataaacatttctatggttttgggtatgaccactcaacagatgattacttggtggtttc 241  Q
      ||| ||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  24367125 tcatttatatgcagatttctatggttttgggtatgacaagtcaacagatgattacttggtggtttc 24367190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 547 - 651
Target Start/End: Original strand, 24367482 - 24367586
Alignment:
Q  547 atttagaggatttttcagtctatggattttgagatatgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactctt 646  Q
    ||||||||||||| ||||||||||| |||||||    ||| || || |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  24367482 atttagaggatttctcagtctatgggttttgaggagagatacactttatatatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactctt 24367581  T
Q  647 gttct 651  Q
    |||||    
T  24367582 gttct 24367586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 56 - 315
Target Start/End: Original strand, 24310023 - 24310288
Alignment:
Q  56 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcac 155  Q
    |||| |||| ||||||| | ||| ||||||||||||||| |||||||||||| | | |  ||||| | | ||| |||||||||||||||||||||||||     
T  24310023 atctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcat 24310122  T
Q  156 aaacaaatacctttg--tgttcc----aattcatataaacatttctatggttttgggtatgaccactcaacagatgattacttggtggtttcattgtgca 249  Q
    | ||||||||||| |  |  |||     |||||  |  | |||||||||||||||| |||||| | |||| ||||||||||||||| |||| | | | |     
T  24310123 agacaaataccttcgcctcctcccaattattcacgtttaaatttctatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcct 24310222  T
Q  250 atgatcgaattccaaactcagatggtgtgccatctcacttgtggcttttctcattgagagctaatg 315  Q
    ||||| | |||||| ||||| ||| ||||| ||||| | | ||| |||| ||| ||||||||||||    
T  24310223 atgattgtattccatactcacatgatgtgctatctcgcatttggattttttcaatgagagctaatg 24310288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 258 - 351
Target Start/End: Original strand, 24415805 - 24415898
Alignment:
Q  258 attccaaactcagatggtgtgccatctcacttgtggcttttctcattgagagctaatgcatggaaggaatttccgagtactacccatttgcctt 351  Q
    |||||||||||||||| ||||| ||||| |||| || |||||||||||||||||||||  ||||| ||| ||  |||| |||||||||||||||    
T  24415805 attccaaactcagatgatgtgctatctcgcttgaggattttctcattgagagctaatgtgtggaacgaaattgtgagtcctacccatttgcctt 24415898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 652
Target Start/End: Original strand, 24340654 - 24340833
Alignment:
Q  471 gaaaggaaacttatagagactcctctcccagttgacgttgactatgattctacactttgtggtttatgggtatttaatttagaggatttttcagtctatg 570  Q
    |||||||||||| |||||| ||||||||||| |||  ||||| ||| || |||  |||||||||||||||||| ||     |||||||| | ||||||||    
T  24340654 gaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgta-----gaggatttctaagtctatg 24340748  T
Q  571 gattttga--gat-atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    | || ||   ||| | ||| |  ||||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||||||||||||    
T  24340749 ggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttctt 24340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 652
Target Start/End: Original strand, 24353019 - 24353198
Alignment:
Q  471 gaaaggaaacttatagagactcctctcccagttgacgttgactatgattctacactttgtggtttatgggtatttaatttagaggatttttcagtctatg 570  Q
    |||||||||||| |||||| ||||||||||| |||  ||||| ||| || |||  |||||||||||||||||| ||     |||||||| | ||||||||    
T  24353019 gaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgta-----gaggatttctaagtctatg 24353113  T
Q  571 gattttga--gat-atgatgcaattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    | || ||   ||| | ||| |  ||||||| ||||| ||| ||||||| |||||||| |||||||||||||| ||||||||||||    
T  24353114 ggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttctt 24353198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 24367339 - 24367439
Alignment:
Q  405 gctattcactggttggcttttcgtcacggtatggatgtttatgttattgttgcctttcatttaacggaaaggaaacttatagagactcctctcccagttg 504  Q
    ||||||||||||||| |||||||| | | |||   |||  |||||||||||||||||| ||||| ||||||||||||| | || | ||||||||||||||    
T  24367339 gctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcctttcttttaatggaaaggaaacttctcgatattcctctcccagttg 24367438  T
Q  505 a 505  Q
    |    
T  24367439 a 24367439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 649
Target Start/End: Original strand, 24310577 - 24310635
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    ||||||||||||||||| |||||||||||||||| || ||||||| ||| |||||||||    
T  24310577 ttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 652
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  599 tgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    ||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 24369802 - 24369863
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    |||||||||||||||||||| | ||   ||||||||||||||||||||| ||||||||||||    
T  24369802 ttgatatatgggtgatggaatagtatggagtgcattcatcttggactaaaactcttgttctt 24369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 24340405 - 24340452
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtttca 24340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 24352770 - 24352817
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttca 24352817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 24340466 - 24340534
Alignment:
Q  286 acttgtggcttttctcattgagagctaatgcatggaaggaatttccgagtactacccatttgccttttt 354  Q
    ||||| || |||||||||||||||||||||| ||||| ||| ||  |||  ||||||||||||||||||    
T  24340466 acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt 24340534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 24352831 - 24352899
Alignment:
Q  286 acttgtggcttttctcattgagagctaatgcatggaaggaatttccgagtactacccatttgccttttt 354  Q
    ||||| || |||||||||||||||||||||| ||||| ||| ||  |||  ||||||||||||||||||    
T  24352831 acttggggattttctcattgagagctaatgcgtggaacgaaattgtgagccctacccatttgccttttt 24352899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 501
Target Start/End: Original strand, 24310370 - 24310477
Alignment:
Q  394 tcttcaatgatgctattcactggttggcttttcgtcacggtatggatgtttatgttattgttgcctttcatttaacggaaaggaaacttatagagactcc 493  Q
    |||||||||  |||||||||||||||||| ||||||| | | |    |  |||||||||||| ||||||||||||  ||||||| |||| |||| | |||    
T  24310370 tcttcaatggggctattcactggttggctattcgtcatgatgtatgcgagtatgttattgtttcctttcatttaattgaaaggatacttctagaaattcc 24310469  T
Q  494 tctcccag 501  Q
    ||||||||    
T  24310470 tctcccag 24310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 24322308 - 24322359
Alignment:
Q  56 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttg 107  Q
    ||||||||| ||||||| | ||| ||||||||||||||||| ||||||||||    
T  24322308 atcttattttgatcttaaagttagaggttcatgtagagggtatatattgttg 24322359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 24369477 - 24369524
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    ||||||||||| |||||| | ||||||||||||||| |||||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttca 24369524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 24365193 - 24365286
Alignment:
Q  61 atttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttca 154  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||| ||| | |||  | ||| | | || ||||||||||||||||  ||||||||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatggaatccatccaatggagttca 24365286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 21015667 - 21015761
Alignment:
Q  77 taaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||| |||||||||||||||||||||| |||||   || ||||| | ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21015667 taaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgt 21015761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 21979866 - 21979770
Alignment:
Q  75 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||||||||||||||||||| |||||||| || || | |  |||||| |||||| ||||||| || || || ||| |||| ||||||||||||||||    
T  21979866 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgt 21979770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 591 - 646
Target Start/End: Original strand, 21016182 - 21016237
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactctt 646  Q
    |||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||    
T  21016182 ttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 596 - 655
Target Start/End: Complemental strand, 21979323 - 21979264
Alignment:
Q  596 atatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||||||||||| ||||||||||||||| ||| ||||||| |||||  ||||||||||||    
T  21979323 atatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttcttcct 21979264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 637
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  597 tatgggtgatggaagaatacaaagtgcattcatcttggact 637  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 21015806 - 21015849
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    |||||||||||||||||||  |||||||||||||| ||||||||    
T  21015806 tatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 47452124 - 47452028
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttg 170  Q
    |||||||||||||||||||||||||||| | ||   || | |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47452124 aattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttg 47452028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 588 - 648
Target Start/End: Complemental strand, 11024206 - 11024146
Alignment:
Q  588 caattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  11024206 caattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 588 - 648
Target Start/End: Complemental strand, 11005631 - 11005571
Alignment:
Q  588 caattgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    ||||||| |||||||| ||| ||||||||||||||||||| |||||||||||| |||||||    
T  11005631 caattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 11015736 - 11015641
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaataccttt 169  Q
    ||||||| ||||||||||||| |||||| | |||  || | |||||| | ||||||||||||||||||| || |||  ||||||||||||||||||    
T  11015736 aattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 11006037 - 11005994
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 11024612 - 11024569
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    |||||||||||||||||||| |||| ||||||||||||||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 47451600 - 47451536
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttcct 655  Q
    |||| |||||||||||| |||||||||||||  |||| ||||||   ||||||||||||||||||    
T  47451600 ttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcct 47451536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 11015600 - 11015557
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggt 238  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  11015600 tatggttttgggtatgaccatttaagagatgattacttggtggt 11015557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 648
Target Start/End: Complemental strand, 11015191 - 11015134
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    |||| |||||||| ||| ||||||||||||||||||| ||||||  ||| ||||||||    
T  11015191 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 653
Target Start/End: Original strand, 48884185 - 48884247
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttcttc 653  Q
    |||| |||| ||||||| |||||||||||||||||   |||||||||||||||||||||||||    
T  48884185 ttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttcttc 48884247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 48883656 - 48883753
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    |||||||||||| |||||||||||| | || ||||||  | |||| | | ||| | |||||||||||| ||| ||| |||||||||||||||||||||    
T  48883656 aattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacctttgt 48883753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 30120478 - 30120435
Alignment:
Q  124 tctacctatggaatccatccaccggagttcacaaacaaatacct 167  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  30120478 tctatctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 596 - 647
Target Start/End: Original strand, 30165863 - 30165914
Alignment:
Q  596 atatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttg 647  Q
    |||||||||||| ||||||||  |||||||||||||||||||| ||||||||    
T  30165863 atatgggtgatgcaagaatacgcagtgcattcatcttggactacgactcttg 30165914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 637
Target Start/End: Complemental strand, 30130957 - 30130916
Alignment:
Q  596 atatgggtgatggaagaatacaaagtgcattcatcttggact 637  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  30130957 atatgggtgatgcaagaatacacagtgcattcatcttggact 30130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 649
Target Start/End: Complemental strand, 30119963 - 30119910
Alignment:
Q  596 atatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgtt 649  Q
    |||||||| ||| |||||||   ||||||||||||||||| |||||||||||||    
T  30119963 atatgggtaatgcaagaatatgcagtgcattcatcttggattaagactcttgtt 30119910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 15348720 - 15348817
Alignment:
Q  74 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 171  Q
    ||||||||||||||||||||| ||| || | ||| | | |  ||||| |||||| ||||||||||||||||||||| |||||| | || |||||||||    
T  15348720 aattaaaggttcatgtagaggctttgtacttttgaactattattcaatcctctatctatggaatccatccaccggatttcacagaaaagtacctttgt 15348817  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 15349244 - 15349305
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgttctt 652  Q
    |||| |||||||||||| |||||||||||||| | || |||||||| |||| ||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 4031990 - 4031938
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggtttca 242  Q
    |||| |||||||||||||||||||| |||||| |||| ||| |||||||||||    
T  4031990 atttatatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 12200304 - 12200355
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttcattgt 246  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||| |||||    
T  12200304 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgt 12200355  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 12444732 - 12444783
Alignment:
Q  195 tatggttttgggtatgaccactcaacagatgattacttggtggtttcattgt 246  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||| |||||    
T  12444732 tatggttttggttatgaccggtcaagagatgattacttggtggttttattgt 12444783  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 15348848 - 15348898
Alignment:
Q  190 atttctatggttttgggtatgaccactcaacagatgattacttggtggttt 240  Q
    |||||||| |||| ||||||||||| | || ||||||||||||||||||||    
T  15348848 atttctatagtttcgggtatgaccaattaaaagatgattacttggtggttt 15348898  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 640
Target Start/End: Complemental strand, 4031626 - 4031577
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaag 640  Q
    |||| |||||||| ||| ||||||||||| ||||||| ||||||||||||    
T  4031626 ttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 648
Target Start/End: Original strand, 12195685 - 12195742
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    |||| ||||||| |||| |||||||||||   || |||||||||||||||||||||||    
T  12195685 ttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 648
Target Start/End: Original strand, 12440113 - 12440170
Alignment:
Q  591 ttgatatatgggtgatggaagaatacaaagtgcattcatcttggactaagactcttgt 648  Q
    |||| ||||||| |||| |||||||||||   || |||||||||||||||||||||||    
T  12440113 ttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 12156 - 12209
Alignment:
Q  56 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgca 109  Q
    |||| |||| ||||||  ||||||||||||||||||| |||||||||| |||||    
T  12156 atctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgca 12209  T

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