View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12587_low_2 (Length: 515)
Name: NF12587_low_2
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 30001389 - 30000913
Alignment:
| Q |
19 |
catcaacaacacatctgaaattctccacaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaacttatatcttccaagtt |
118 |
Q |
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| T |
30001389 |
catcaataacacatctgaaattctccgcaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaact-atatcttccaagtt |
30001291 |
T |
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| Q |
119 |
ccaatatcctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcaca |
218 |
Q |
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| T |
30001290 |
ccaatatcctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcaca |
30001191 |
T |
|
| Q |
219 |
agaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001190 |
agaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctcc |
30001091 |
T |
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| Q |
319 |
acttcatgatcccttgaaccaattgcacaacaacctgtatcacgcctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001090 |
acttcatgatcccttgaaccaattgcacaacaacccgtatcatgtctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgatt |
30000991 |
T |
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| Q |
419 |
ccacttccatcctctcaacttttccttggttcaaagatgtagaactaagattcttcctattaacaactgaatgcaacc |
496 |
Q |
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| T |
30000990 |
ccacttccatcctctcaacttttccttggttcaaagatgtagaactaagattcttcctattaacaactgaatgcaacc |
30000913 |
T |
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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 169 - 337
Target Start/End: Complemental strand, 45199361 - 45199193
Alignment:
| Q |
169 |
acccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggat |
268 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||| | |||||| |||||||| || ||||| |||||||||||||| ||||| || |||| |
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| T |
45199361 |
acccagtatcggtatgcgacaacttcagctggtgtattatcagggtgacaagatcccaaactgatttgcttaacagcttcaatctgtacagcctcgggat |
45199262 |
T |
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| Q |
269 |
cctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcatgatcccttgaac |
337 |
Q |
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||||||||||||||| ||| ||||| | | | |||||| ||||| ||||||||| |||||||||||| |
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| T |
45199261 |
cctcctttgcactcagctctaaagcaagctgaatttgatattcttcttccacttcaggatcccttgaac |
45199193 |
T |
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