View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12587_low_3 (Length: 425)
Name: NF12587_low_3
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 79 - 411
Target Start/End: Original strand, 2756974 - 2757315
Alignment:
| Q |
79 |
tactctttgttgtgttttatgttacaactgtgacatgggacataaaaaacaacaactactgcactatttcttgttctaatgtcgtattgttcgtccaatt |
178 |
Q |
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| T |
2756974 |
tactctttgttgtgttttatgttacaactgcaacatgggacataaaaaacaacaactactgcactatttcttgttctaatgttgtattgttcgtccaatt |
2757073 |
T |
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| Q |
179 |
aatctaactttatataatacaagtgattggtccattttgtagtcaaaaaagnnnnnnngaggaaaaaatttcttgatatagtacttacttacattaattg |
278 |
Q |
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| T |
2757074 |
aatctaactttatataatacaagtgattggtccattttgtagtcaaaaaagtttttttgaggaaaaaatttcttgatatagtacttacttacattaattg |
2757173 |
T |
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| Q |
279 |
atacaactcaaataaagacaaaatccattaatttattttttatacaaagacaaatttttactataagttcaaaatcttacgcgctaagatttcataaaa- |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2757174 |
atacaactcaaataaagacaaaatccattaatttattttttatacaaagacaaatttttactataagttcaaaatcttacgcgctaagattttataaaaa |
2757273 |
T |
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| Q |
378 |
--------ataaaaagtttccatactttcattttagatcagt |
411 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
2757274 |
taaaaaaaataaaaagtttccatactttcatttaagatcagt |
2757315 |
T |
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