View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12587_low_4 (Length: 324)
Name: NF12587_low_4
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 28532865 - 28533029
Alignment:
| Q |
20 |
ccatttgctgggaagcggttaccaacgtttgggagtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgt |
119 |
Q |
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| T |
28532865 |
ccatttgctgggaagcggttaccaacgtttggaagtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgt |
28532964 |
T |
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| Q |
120 |
gaccgagatagcgagagagattgagggaattgagatgggtgaaccttttgaagaggctacgtagg |
184 |
Q |
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| T |
28532965 |
tacctagatagcgagagagatcgaggaaattgagatgggtgaaccttttgaagaggctaagtagg |
28533029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
| Q |
182 |
aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc |
281 |
Q |
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| T |
28533069 |
aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc |
28533168 |
T |
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| Q |
282 |
tgaatatacattcccaaca |
300 |
Q |
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| T |
28533169 |
tgaagatacattcccaaca |
28533187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
| Q |
190 |
ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata |
289 |
Q |
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| T |
51763191 |
ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata |
51763092 |
T |
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| Q |
290 |
cattcccaaca |
300 |
Q |
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| T |
51763091 |
gattcccaaca |
51763081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
| Q |
184 |
gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc |
258 |
Q |
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| T |
6588056 |
gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc |
6587982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
| Q |
56 |
ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag |
153 |
Q |
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| T |
6588241 |
ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag |
6588144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 15091334 - 15091293
Alignment:
| Q |
265 |
gtcgttgatgatgaatctgaatatacattcccaacactcatc |
306 |
Q |
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| T |
15091334 |
gtcgttgatgatgaatctgaagacgcattcccaacactcatc |
15091293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 1537299 - 1537258
Alignment:
| Q |
267 |
cgttgatgatgaatctgaatatacattcccaacactcatcag |
308 |
Q |
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| T |
1537299 |
cgttgttgaggaatctgaatacacattcccaacactcatcag |
1537258 |
T |
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