View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12587_low_5 (Length: 316)
Name: NF12587_low_5
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 42198769 - 42198495
Alignment:
| Q |
30 |
tattggacaattttacaaatctctatattcttgcaataggaaacaaccagttctcgcgaagaattcctgccagtattggacaatgcacgagattgagtat |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42198769 |
tatttgacaattttacaaatctctatattcttgcaataggaaacaaccagttctcgggaagaattcctgccagtattggacaatgcacgagattgagtat |
42198670 |
T |
|
| Q |
130 |
tgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42198669 |
tgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaaa |
42198570 |
T |
|
| Q |
230 |
ggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagtgaac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
42198569 |
ggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacaactggttgtcagggaac |
42198495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 42211332 - 42211087
Alignment:
| Q |
38 |
aattttacaaatctctatattcttgcaataggaaacaaccagttctcgcgaagaattcctgccagtattggacaatgcacgagattgagtattgttgaca |
137 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||||||| | ||||||| ||| ||||| |||| ||||| |||||||||| || | ||| |
|
|
| T |
42211332 |
aattttacaaatctgtttattctagcaataggaaacaaccagttctcaggtagaattcatgcaagtatcggacgatgcaagagattgagttttctggact |
42211233 |
T |
|
| Q |
138 |
tggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcgat |
237 |
Q |
| |
|
|| ||||||||| |||| ||||| |||||| ||||||||||||||| || || ||||||||| || |||| || ||||| ||| |||| |||||| | |
|
|
| T |
42211232 |
tgcgaatgaataagcttgctggtgtcatacccatggagatttttcaactctctggcttgacaactttatacttacatggaaattctctgaacggttcgct |
42211133 |
T |
|
| Q |
238 |
tcctcctgagttaaaaatggagcatctagagaccatggttatttcg |
283 |
Q |
| |
|
||||||| | || ||||||||||| |||||| |||||||| ||||| |
|
|
| T |
42211132 |
tcctcctcaattcaaaatggagcagctagaggccatggttgtttcg |
42211087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 42223549 - 42223304
Alignment:
| Q |
37 |
caattttacaaatctctatattcttgcaataggaaacaaccagttctcgcgaagaattcctgccagtattggacaatgcacgagattgagtattgttgac |
136 |
Q |
| |
|
||||||| ||||||| || ||||| ||||||||||||||||||||| | | ||||| || ||||| |||||||||| |||||||| | | | ||| |
|
|
| T |
42223549 |
caatttttcaaatctgattactcttggaataggaaacaaccagttctcaggtaaaattcacgcgagtataggacaatgcaagagattgaattatctggac |
42223450 |
T |
|
| Q |
137 |
atggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttgaacttgcaaggaaactctttgaatggttcga |
236 |
Q |
| |
|
|| |||||||||| |||||||||| |||||||||||||||||||||| || | ||||||||| || |||| || ||||| ||| ||||||||||| |
|
|
| T |
42223449 |
ttgcaaatgaataagcttgttggtgtcataccaatggagatttttcaactctctagcttgacaactttatacttacatggaaattctctgaatggttcgc |
42223350 |
T |
|
| Q |
237 |
ttcctcctgagttaaaaatggagcatctagagaccatggttatttc |
282 |
Q |
| |
|
|||||||| ||| || |||||||| |||| | |||||||| |||| |
|
|
| T |
42223349 |
ttcctccttcgttcaagatggagcagctagtggccatggttgtttc |
42223304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University