View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12587_low_6 (Length: 278)
Name: NF12587_low_6
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 36534058 - 36533921
Alignment:
| Q |
6 |
cactatgcaccacaacagaaaatgggaaaaatatgaatatgaagcaatgttcattttttgtgtgattggtgattaatttgaggacacaaattaaccatgt |
105 |
Q |
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| T |
36534058 |
cactatacaccacaacagaaaatgggaaaaatatgaatatgaa-caatgttcattttttgtgtgattggtgattaatttgaggacacaaattaaccatgt |
36533960 |
T |
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| Q |
106 |
tcattttttgttccataccacaacaacagctcatataaa |
144 |
Q |
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| T |
36533959 |
tcattttttgttccataccacaacaacagctcatataaa |
36533921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 36533843 - 36533793
Alignment:
| Q |
217 |
atgctacgtttaaacacaccttcctcaagactcggtcaaatgccaccctat |
267 |
Q |
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| T |
36533843 |
atgctacgtttaaacacaccttcctcaagactcggtcaaatgccaccctat |
36533793 |
T |
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