View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12587_low_7 (Length: 250)
Name: NF12587_low_7
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 201
Target Start/End: Complemental strand, 17582061 - 17581908
Alignment:
| Q |
40 |
cgacagtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17582061 |
cgacggtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
17581962 |
T |
|
| Q |
140 |
tggcatatttatcaaatgaccagtgatttgtttttgttacgaaggttagcaatgattctgct |
201 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17581961 |
tagcatattt--------accagtgatttgtttttgttacgaaggttagcaatgattctgct |
17581908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 53896391 - 53896354
Alignment:
| Q |
45 |
gtcaatcgtaacagtttgatgatgaaaactccttgcct |
82 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |
|
|
| T |
53896391 |
gtcaatcgtaacagtttgttggtgaaaactccttgcct |
53896354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University