View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12587_low_9 (Length: 223)
Name: NF12587_low_9
Description: NF12587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12587_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 12290637 - 12290830
Alignment:
| Q |
14 |
agcagagaccagacccttcacacatgtacacacaaacacaaattnnnnnnnnnnnnnntagtacttcctaatggaaaaatcacaccaccactcacttcat |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12290637 |
agcagagaccagacccttcatacatgtacacacaaacacaaatcaaaaaagaaaaaaatggtacttcctaatggaaaaatcacaccaccactcacttcat |
12290736 |
T |
|
| Q |
114 |
gaacactatatgtcgctgctctagaaaaccacaaagttaagccaataaaaaatccaatgataaacactatggcgaaaacgatgatgactttgat |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12290737 |
gaacactatatgttgctgctctagaaaaccacgaagttaagccaataaaaaatccaatgataaacactatggcgaaaacgatgatgactttgat |
12290830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 12292496 - 12292356
Alignment:
| Q |
72 |
tagtacttcctaatggaaaaatcacaccaccactcacttcatgaacactatatgtcgctgctctagaaaaccacaaagttaagccaataaaaaatccaat |
171 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12292496 |
tagtacttcctaatggaaaaacaacaccactactcactccatgaacaccatatgtcgctgctctagaaaaccacgaagttaagccaataaaaaatccaat |
12292397 |
T |
|
| Q |
172 |
gataaacactatggcgaaaacgatgatgactttgatgtcca |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12292396 |
tataaacactaatttgaaaacgatgatgactttgatatcca |
12292356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University