View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12588_high_2 (Length: 364)
Name: NF12588_high_2
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 158 - 347
Target Start/End: Complemental strand, 3111248 - 3111059
Alignment:
| Q |
158 |
tgataagtcaattattattgcttccttgatactgcttccactgctacttccaccaacaacatcctcccctggcaatttctccacatactccttggaatca |
257 |
Q |
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| T |
3111248 |
tgataagtcaattattattgcttccttgatactgcttccactactactaccaccaacaacatcctcccctggcaatttctccacatactccttggaatca |
3111149 |
T |
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| Q |
258 |
attagatcgaattgttcttcggaagatggatacttcctcttttgaccagtctgctcttcataaaacttttgctccaccatatcttgccac |
347 |
Q |
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| T |
3111148 |
attagatcgaattgttcttcggaagatggatacttcctcttttgaccagtctgctcctcataaaacttttgctccaccatatcttgccac |
3111059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 3111389 - 3111275
Alignment:
| Q |
17 |
agatcataatgcagctactctaccaaaatgcataaaatttggaggacatcaagttcattaaataaatgagaacaatcacagaaaacagagtttgggtaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111389 |
agatcataatgcagctactctaccaaaatgcataaaatttggaggacatcaagttcattaaataaatgagaacaatcacagaaaacagagtttgggtaat |
3111290 |
T |
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| Q |
117 |
aagggtgcaataacc |
131 |
Q |
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| T |
3111289 |
aagggtgcaataacc |
3111275 |
T |
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