View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12588_high_3 (Length: 336)
Name: NF12588_high_3
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 43559290 - 43558980
Alignment:
| Q |
10 |
gtgatagatggtaaaagagaattgttaacagaggcaacacgagcacaaaagccacgtagaatttcagcttcttctaccgttagacccaacgaggtaagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43559290 |
gtgatagatggtaaaagagaattgttaacagaggcaacacgagcacaaaagccacgtagaatttcagcttcttctaccgtgagacccaacgaggtaagca |
43559191 |
T |
|
| Q |
110 |
aatttccccaacattcttgagctatagtaagaagagcattacaacaaccagatccaagatgtgtctgaccattaaggaaaaatgtaacaatatcaccagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43559190 |
aatttccccaacattcttgagctatagtaagaagagcattacaacaaccagatccaagatgtgtctgaccattaaggaaaaatgtaacaatatcaccagt |
43559091 |
T |
|
| Q |
210 |
acaatgttgtagctccaacattgtctcccaacatttgttgttggggccacttccatcaaataattctaaacgtgatgctagggtttttgttgagctcaat |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43559090 |
acaatgttgaagctccaacattgtctcccaacatttgttgttggggccacttccatcaaataattctaaacgtgatgctagggtttttgttgagctcaat |
43558991 |
T |
|
| Q |
310 |
gacgttgctgt |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
43558990 |
gacgttgctgt |
43558980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University