View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12588_high_4 (Length: 282)
Name: NF12588_high_4
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 11413101 - 11413249
Alignment:
| Q |
5 |
caagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttatt |
104 |
Q |
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| T |
11413101 |
caagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttatt |
11413200 |
T |
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| Q |
105 |
gtgctcatcattgacccgtgtgaagcacgggagcacgatctagtatgat |
153 |
Q |
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| T |
11413201 |
gtgcttatcattgacccgtgtgaagcacgggagcacgatttagtatgat |
11413249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 11413327 - 11413383
Alignment:
| Q |
207 |
aatttggtgtgtattaagatacaatcccacctcttatattagactattacttttccc |
263 |
Q |
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| T |
11413327 |
aatttggtgtgtattaagatacaatcctacctcttatattagactattacttttccc |
11413383 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
| Q |
9 |
aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt |
76 |
Q |
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| T |
34875102 |
aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt |
34875169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 20807390 - 20807538
Alignment:
| Q |
7 |
agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- |
100 |
Q |
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| T |
20807390 |
agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat |
20807489 |
T |
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| Q |
101 |
-tattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagt |
148 |
Q |
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| T |
20807490 |
atattgtgctcatcattttcccgtgcgaagcacggttgcacaatctagt |
20807538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 15029151 - 15029102
Alignment:
| Q |
100 |
ttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagta |
149 |
Q |
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| T |
15029151 |
ttattgtgttcaccattgacccgtgcgaagcacgggagtgcgatctagta |
15029102 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
| Q |
10 |
atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta |
93 |
Q |
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| T |
15598488 |
atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta |
15598402 |
T |
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