View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12588_low_1 (Length: 571)
Name: NF12588_low_1
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 4825290 - 4825533
Alignment:
| Q |
13 |
ttcactgtttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaattcatt |
112 |
Q |
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| T |
4825290 |
ttcactgtttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaatttatt |
4825389 |
T |
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| Q |
113 |
ttgatactaagttctcattcacgtgcatcttttccattgttgttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4825390 |
ttgatactaagttctcattcacgtgcatcttttccattgttgttctcagttggaagttgttattaacacacatctccgatttgtgaacccatagctttga |
4825489 |
T |
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| Q |
213 |
aaatatcagaactggtgttctcagttggaaattgtcatcctcat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4825490 |
aaatatcagaactggtgttctcagttggaaattgtcatcctcat |
4825533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 7709404 - 7709292
Alignment:
| Q |
20 |
tttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagttcttgaaccctaatttgaactcgttttggtcccaattcattttgatac |
119 |
Q |
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|||| |||||||||||||| | |||||| | |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||| || |
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| T |
7709404 |
tttctaaatggattggccaccatgattccgaaattcgacattcaccgtaagttctcgaacc---atttgaactcgttttggtcccaatttgttttgacac |
7709308 |
T |
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| Q |
120 |
taagttctcattcacg |
135 |
Q |
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|||| ||||||||||| |
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| T |
7709307 |
taagctctcattcacg |
7709292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 7709249 - 7709149
Alignment:
| Q |
154 |
gttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttgaaaatatcagaactggtgttctcagttggaaattgtcatcct |
253 |
Q |
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|||||||||||||||| || ||| ||| ||||| |||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||| |
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| T |
7709249 |
gttctcagttggaagtggtgattcacgaacatccccgattcgtgaacccatagctttgaagatatcagaattggtgttctctattggaaattgtcgtcct |
7709150 |
T |
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| Q |
254 |
c |
254 |
Q |
| |
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| |
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| T |
7709149 |
c |
7709149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 40394637 - 40394673
Alignment:
| Q |
20 |
tttccaaatggattggccatcgtgattctgcaattcg |
56 |
Q |
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| T |
40394637 |
tttccaaatggattggccatcgtgcttctccaattcg |
40394673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 277 - 540
Target Start/End: Complemental strand, 2151032 - 2150770
Alignment:
| Q |
277 |
atttggatttggtatatgcccgaactgacccaaatatacctataataactcgtaaaattcacccgactaatacgttattcatttaaacccgaaccaaatg |
376 |
Q |
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||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||| ||||| ||||||||| |
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| T |
2151032 |
atttggatttggtatatacccgaaccgaaccaaatatagctataataatccgtaaaattcacccgactaatacattatccattttaacccaaaccaaatg |
2150933 |
T |
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| Q |
377 |
tataaatttacattgggttggtcaagtaaattcgggtccacccatatttgcccacccctatgtatcaggaactcaggaacttgtatggtgaataattagt |
476 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2150932 |
tataaatttacattggattggtcgggtaaattcgggtccacccgtatttgcccacccc-atgtatcaggaactcaggaacttgtatggtgaataattagt |
2150834 |
T |
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| Q |
477 |
catggacaaatgtccaggttggccttcatgtgcagtcaaagaatttattctatctctaggtaaa |
540 |
Q |
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| T |
2150833 |
catggacaaatgtccaggttggccttcatgtgcagtcaaagaatttattctatctctaggtaaa |
2150770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 17165421 - 17165369
Alignment:
| Q |
20 |
tttccaaatggattggccatcgtgattctgcaattcgacattcactgtaagtt |
72 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17165421 |
tttccaaatggattggccaccgtgattctgcaattcgacattcactgtaagtt |
17165369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 17165212 - 17165142
Alignment:
| Q |
154 |
gttctcagttggaagttgttattaacgcacatctccgatttgtgaacccatagctttgaaaatatcagaac |
224 |
Q |
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| T |
17165212 |
gttctcagttggaagttgtgattcacgcacatctccgattcgtgaaccgatagatttgaagatatcagaac |
17165142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 39423596 - 39423478
Alignment:
| Q |
318 |
ataataactcgtaaaattcacccgactaatacgttattcatttaaacccgaaccaaatgtataaatttacattgggttggtcaagtaaattcgggtccac |
417 |
Q |
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|||||| ||||||||||||||| |||||| ||| | |||| |||| ||||| ||||| ||||||||||| ||||||| |||||||||||||||| |
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| T |
39423596 |
ataatagctcgtaaaattcacctgactaactcgtgaccaattttaacctgaaccgaatgtgtaaatttacatcaggttggttgggtaaattcgggtccac |
39423497 |
T |
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| Q |
418 |
ccatatttgcccaccccta |
436 |
Q |
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|| ||||||||| |||||| |
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| T |
39423496 |
ccgtatttgcccgccccta |
39423478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 55721541 - 55721585
Alignment:
| Q |
296 |
ccgaactgacccaaatatacctataataactcgtaaaattcaccc |
340 |
Q |
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| T |
55721541 |
ccgaactgaaccaaatatacccataataactcgcaaagttcaccc |
55721585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 436
Target Start/End: Complemental strand, 13190293 - 13190219
Alignment:
| Q |
362 |
aacccgaaccaaatgtataaatttacattgggttggtcaagtaaattcgggtccacccatatttgcccaccccta |
436 |
Q |
| |
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|||||||| ||||||| ||||||||||| |||||||| ||||||||| || ||||| ||| |||||||||||| |
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| T |
13190293 |
aacccgaatcaaatgtgtaaatttacatcaggttggtcgggtaaattcgagttcacccgtatatgcccaccccta |
13190219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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