View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12588_low_2 (Length: 413)
Name: NF12588_low_2
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 31234738 - 31234356
Alignment:
| Q |
14 |
agacacgtattgactataattagtttttgagtcccgtctttttgggtggcccagctcggttgaaccgtttgcacacccccaagaatgggcctgtctatct |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234738 |
agacatgtattgactataattagtttttgagtcccgtctttttgggtggcccagctcggttgaaccgtttgcacacccccaagaatgggcctgtctatct |
31234639 |
T |
|
| Q |
114 |
ctaatttagtcgctaaccgtagagttgccaaatttgattaccaaatttatactcattgaaaagaatttcgtcattattaaatttttcttgtaccggtcaa |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234638 |
ctaatttagtcgctaaccgtagagttgtcaaatttgattaccaaatttatactcattgaaaagaatttcgtcattattaaatttttcttgtaccggtcaa |
31234539 |
T |
|
| Q |
214 |
attcctaccattgagttaacttcgtcccaattttcacaggtagtagaatactcgacgctgaaggtaagcctatctgcataagtcttgttgacaaaacaaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234538 |
attcctaccattgagttaacttcgtcccaattttcacaggtagtagaatactcgacgatgaaggtaagcctatctgcataagtcttgttgacaaaacaaa |
31234439 |
T |
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| Q |
314 |
caataaccaaattgttccaacaagtcttccttaccctataaagctagagattgttgtacttgatggagattttccacatgatg |
396 |
Q |
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| T |
31234438 |
caataaccaaattgttcaaacaagtcttccttaccctataaagctagagattgttgtacttgatggagattttccacatgatg |
31234356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 31243875 - 31243493
Alignment:
| Q |
14 |
agacacgtattgactataattagtttttgagtcccgtctttttgggtggcccagctcggttgaaccgtttgcacacccccaagaatgggcctgtctatct |
113 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
31243875 |
agacatgtattgactataattagtttttgagtcccgtctttttgggtggcccagctcgattgaaccgtttccacatcccaaagaatgggcctgtctatct |
31243776 |
T |
|
| Q |
114 |
ctaatttagtcgctaaccgtagagttgccaaatttgattaccaaatttatactcattgaaaagaatttcgtcattattaaatttttcttgtaccggtcaa |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
31243775 |
ctaatttagtcgctaaccgtagagttgttaaatttgattaccaaatttatactcaatgaaaagaatttcatcattattaaatttttcttgtattggtcaa |
31243676 |
T |
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| Q |
214 |
attcctaccattgagttaacttcgtcccaattttcacaggtagtagaatactcgacgctgaaggtaagcctatctgcataagtcttgttgacaaaacaaa |
313 |
Q |
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| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31243675 |
acttttaccattgagttaacttcgttccaattttcacaggtagtagaatactcgacgctgaaggtaagcctatctgcataagtcttgttgacaaaacaaa |
31243576 |
T |
|
| Q |
314 |
caataaccaaattgttccaacaagtcttccttaccctataaagctagagattgttgtacttgatggagattttccacatgatg |
396 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31243575 |
caataaccaaattgttcaaacaagtcttccttaccctataaagctagagattgttgtacttgatggagattttccacatgatg |
31243493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 31253149 - 31252998
Alignment:
| Q |
179 |
tttcgtcattattaaatttttcttgtaccggtcaaattcctaccattgagttaacttcgtcccaattttcacaggtagtagaatactcgacgctgaaggt |
278 |
Q |
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||||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31253149 |
tttcgtcgttattaaatttttcttgtattggtcaaacttctaccattgagttaacttcgtcccaattttcacaggtagtagaatactcgacgctgaaggt |
31253050 |
T |
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| Q |
279 |
aagcctatctgcataagtcttgttgacaaaacaaacaataaccaaattgttc |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31253049 |
aagcctatctgcataagtcttgttgacaaaacaaacaataaccaaattgttc |
31252998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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