View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12588_low_3 (Length: 404)
Name: NF12588_low_3
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 29292313 - 29291940
Alignment:
| Q |
15 |
acagaccacttgacaagttatgtcatcttaaaggtatatttgaaatcaatggtagatcatttatctcctttatatggcaattctggtttgaaggctgtaa |
114 |
Q |
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| T |
29292313 |
acagaccacttgacaagttatgtcatcttaaaggtatatttgaaatcaatggtagatcatttatctcctttatatggcaattctggtttgaaggctgtaa |
29292214 |
T |
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| Q |
115 |
tcctaaataaatgaacactgtgcaggcactggatcaattctgtcaatgtcaaagtgtgaatattgacaaattcatcgataaaactatgcttattctgctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29292213 |
tcctaaataaatgaacactgtgcaggcactggatcaattctgtcaatgtcaaagtgtgaatattgacaaattcatcgataaaactatgcttattctgctt |
29292114 |
T |
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| Q |
215 |
aaatatgctcaacttgatcttgacttaacagacagtatgcccgtggatgtgaggtttgcctctacattttagtacaaaaatgataaaataatctccatta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
29292113 |
aaatatgctcaacttgatcttgacttaacagacagtatgcccgtggatttgaggtttgcctctacattttagtactacaatgataaaataatctccatta |
29292014 |
T |
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| Q |
315 |
ggtttgatttgagtgaatattattcgatggtattgacaaatcacaatgtataacaggaaggtaaattataaaga |
388 |
Q |
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||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29292013 |
ggtttgatttgagtgaataatattctattgtattgacaaatcacaatgtataacaggaaggtaaattataaaga |
29291940 |
T |
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