View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12588_low_7 (Length: 278)
Name: NF12588_low_7
Description: NF12588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12588_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 38867070 - 38866808
Alignment:
| Q |
6 |
atgagtttgccgctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagttta |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38867070 |
atgagtttgccgctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagttta |
38866971 |
T |
|
| Q |
106 |
agccctactttcaagtgtccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaat |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866970 |
agccttactttcaagtgtccatgtggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaat |
38866871 |
T |
|
| Q |
206 |
tgattccttggggattgatcacttttgtttatattctgatttagtttggaaaagtcttctctg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866870 |
tgattccttggggattgatcacttttgtttatattctgatttagtttggaaaagtcttctctg |
38866808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 29169358 - 29169605
Alignment:
| Q |
21 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaag |
120 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||| ||||||||| |||||||| | |
|
|
| T |
29169358 |
aatgaattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcagg |
29169457 |
T |
|
| Q |
121 |
tgtccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttggggat |
220 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
29169458 |
tgcccatgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattctttggggat |
29169557 |
T |
|
| Q |
221 |
tgatcacttttgtttatattctgatttagtttggaaaagtcttctctg |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29169558 |
ggatcaattttgtttatattctgatttagtttggaaaagtcttgtctg |
29169605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 29426334 - 29426521
Alignment:
| Q |
28 |
tcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccat |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29426334 |
tcatttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccat |
29426433 |
T |
|
| Q |
128 |
gtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatg-tttaattgattcctt |
214 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
29426434 |
gtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatcaaaatgttttaattgattcctt |
29426521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 1758872 - 1759063
Alignment:
| Q |
27 |
ttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtcca |
126 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
1758872 |
ttcatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtcca |
1758971 |
T |
|
| Q |
127 |
tgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttgggg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
1758972 |
tgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattccttgggg |
1759063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 29566703 - 29566506
Alignment:
| Q |
18 |
ctaaatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttc |
117 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| ||||| || ||||||||| ||||||| |
|
|
| T |
29566703 |
ctaaatgaattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttc |
29566604 |
T |
|
| Q |
118 |
aagtgtccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatg-tttaattgattcctt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
29566603 |
aagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatcaaaatgttttaattgattcctt |
29566506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 29250445 - 29250668
Alignment:
| Q |
27 |
ttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||| |
|
|
| T |
29250445 |
ttcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgataagtgtttgagccttactttcaagtgtcca |
29250544 |
T |
|
| Q |
127 |
tgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttggggattgatca |
226 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| || |||||||| |||||| ||||||||||| ||||| |
|
|
| T |
29250545 |
tgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagtatgttt-----attccttgggggaggatca |
29250639 |
T |
|
| Q |
227 |
cttttgtttatattctgatttagtttgga |
255 |
Q |
| |
|
| ||||||| ||||| | ||||||||||| |
|
|
| T |
29250640 |
cctttgtttttattccgttttagtttgga |
29250668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 32432108 - 32432280
Alignment:
| Q |
22 |
atgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagt |
121 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| |||| | | ||||||||||||||||||||||| |||||| |||| ||| ||||||||| || ||| | || |
|
|
| T |
32432108 |
atgaattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggt |
32432207 |
T |
|
| Q |
122 |
gtccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
194 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
32432208 |
gtccatgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatca |
32432280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 27519976 - 27519807
Alignment:
| Q |
25 |
agttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtc |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
27519976 |
agttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtc |
27519877 |
T |
|
| Q |
125 |
catgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27519876 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
27519807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 27463053 - 27463274
Alignment:
| Q |
30 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccatgt |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27463053 |
atttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
27463152 |
T |
|
| Q |
130 |
ggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttggggattgatcactt |
229 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||| ||| | || |||||||| |
|
|
| T |
27463153 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttatttg-------tgacatggatcactt |
27463245 |
T |
|
| Q |
230 |
ttgtttatattctgatttagtttggaaaa |
258 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
27463246 |
ttgtttatattctgttttagtttggaaaa |
27463274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 27483425 - 27483646
Alignment:
| Q |
30 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccatgt |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27483425 |
atttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
27483524 |
T |
|
| Q |
130 |
ggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttggggattgatcactt |
229 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||| ||| | || |||||||| |
|
|
| T |
27483525 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttatttg-------tgacatggatcactt |
27483617 |
T |
|
| Q |
230 |
ttgtttatattctgatttagtttggaaaa |
258 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
27483618 |
ttgtttatattctgttttagtttggaaaa |
27483646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 27471659 - 27471873
Alignment:
| Q |
37 |
tttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccatgtggcaagg |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27471659 |
tttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgtggcaagg |
27471758 |
T |
|
| Q |
137 |
gatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattccttggggattgatcacttttgttta |
236 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||| ||| | || ||||||||||||||| |
|
|
| T |
27471759 |
gatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttatttg-------tgacatggatcacttttgttta |
27471851 |
T |
|
| Q |
237 |
tattctgatttagtttggaaaa |
258 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
27471852 |
tattctgttttagtttggaaaa |
27471873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 18987780 - 18987956
Alignment:
| Q |
35 |
tgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccatgtggcaa |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18987780 |
tgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattgataagtgtttaagccttactttcaagtgtccatgtggcaa |
18987879 |
T |
|
| Q |
135 |
gggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattc |
211 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
18987880 |
gggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgcttaatagattc |
18987956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 27519786 - 27519750
Alignment:
| Q |
222 |
gatcacttttgtttatattctgatttagtttggaaaa |
258 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27519786 |
gatcacttttgtttattttctgttttagtttggaaaa |
27519750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 25520045 - 25520218
Alignment:
| Q |
21 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
25520045 |
aatgagttcatttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaag |
25520144 |
T |
|
| Q |
121 |
tgtccatgtggcaagggatatgaggttctaatatatgcagacaattgttactacaagttggtctagaagaatca |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
25520145 |
tgtccatgtagcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatca |
25520218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
| Q |
61 |
gattatgaagaagctgttagtgtggagtgggttgataagagtttaagccctactttcaagtgtccatgtggcaagggatatgaggttctaatatatgcag |
160 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| ||| || | |||||| ||||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca |
1699975 |
T |
|
| Q |
161 |
acaattgttactacaagttggtctaga |
187 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
1699974 |
acaattgttattacaagttggtctaga |
1699948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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