View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12589_high_3 (Length: 351)

Name: NF12589_high_3
Description: NF12589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12589_high_3
NF12589_high_3
[»] chr2 (2 HSPs)
chr2 (14-230)||(4986871-4987096)
chr2 (232-300)||(45420990-45421058)
[»] chr6 (2 HSPs)
chr6 (232-305)||(33629568-33629641)
chr6 (232-305)||(1682510-1682583)
[»] chr5 (1 HSPs)
chr5 (240-306)||(10487512-10487578)
[»] chr4 (5 HSPs)
chr4 (232-306)||(3130576-3130650)
chr4 (232-306)||(47540394-47540468)
chr4 (223-306)||(5817769-5817853)
chr4 (239-306)||(8655678-8655745)
chr4 (232-306)||(7663838-7663912)
[»] chr3 (4 HSPs)
chr3 (232-306)||(13447948-13448022)
chr3 (232-306)||(32004449-32004523)
chr3 (229-303)||(38542811-38542885)
chr3 (232-306)||(30167945-30168019)
[»] chr1 (9 HSPs)
chr1 (232-306)||(4644481-4644555)
chr1 (239-306)||(21527629-21527696)
chr1 (219-306)||(9528337-9528425)
chr1 (234-306)||(52336131-52336203)
chr1 (243-306)||(14366233-14366296)
chr1 (236-306)||(47115756-47115826)
chr1 (239-305)||(48266323-48266389)
chr1 (232-306)||(36305252-36305325)
chr1 (232-306)||(36928635-36928708)
[»] scaffold0220 (1 HSPs)
scaffold0220 (239-306)||(22818-22885)
[»] chr8 (2 HSPs)
chr8 (232-306)||(19385307-19385381)
chr8 (232-306)||(7451820-7451893)
[»] scaffold0029 (1 HSPs)
scaffold0029 (239-306)||(135241-135308)
[»] scaffold0002 (3 HSPs)
scaffold0002 (239-306)||(313068-313135)
scaffold0002 (239-306)||(328522-328589)
scaffold0002 (277-306)||(321785-321814)
[»] chr7 (5 HSPs)
chr7 (232-303)||(15654305-15654376)
chr7 (259-306)||(9534140-9534187)
chr7 (236-306)||(19402686-19402756)
chr7 (232-306)||(21277650-21277723)
chr7 (233-306)||(46623170-46623243)
[»] scaffold0418 (1 HSPs)
scaffold0418 (232-306)||(7141-7215)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 4987096 - 4986871
Alignment:
Q  14 agagacatcataaatcttgatgttaccatcatg---------gcatatagtttgttgaactttagttataacttgtagattatgagtttaattgacttcc 104  Q
    |||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4987096 agagacatcataaatcttgatgttacaatcatgatattgatcgcatatagtttgttgaactttagttataccttgtagattatgagtttaattgacttcc 4986997  T
Q  105 gtgtcaatttagatgatctaatttaattttnnnnnnngaaagaaccggttattacttttcgcacacgttttttcttccactacacctgattcctctatac 204  Q
    |||||||||||||||||||||||||| |||       ||||| || |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  4986996 gtgtcaatttagatgatctaatttaactttaaaagaagaaaggactggttattactttccgcacacgttttttctttcactacatctgattcctctatac 4986897  T
Q  205 gattaatttttggaggtgtaattttt 230  Q
    |||||| |||||||||||||||||||    
T  4986896 gattaacttttggaggtgtaattttt 4986871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 45421058 - 45420990
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttgg 300  Q
    |||||||| |||||||||| | |||| ||||||||||||||||| | |||||||||||| |||||||||    
T  45421058 gttcctgtagtagtctctaaggcacaccttgtgctttagggactgctttgttatataatctcattttgg 45420990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 33629641 - 33629568
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggctttt 305  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33629641 gttcttgttgtagtctctatggcacaccttgtgctttagggactacattgttatataatttcattttggctttt 33629568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 1682583 - 1682510
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggctttt 305  Q
    |||| ||| |||||||||||| |||| ||||||||||||| ||| |||||| |||||||||||||||| |||||    
T  1682583 gttcttgtagtagtctctatggcacaccttgtgctttaggcactgcattgtcatataatttcattttgactttt 1682510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 10487512 - 10487578
Alignment:
Q  240 tgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  10487512 tgtagtctctatggcacaccttgtgctctagggactgcattgttatataatttcattttggcttttt 10487578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 3130576 - 3130650
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||||||||||||||| | |||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  3130576 gttcctgttgtagtctctacggcacaccttgtactttaggaactgcattgttatataatttcattttggcttttt 3130650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 47540468 - 47540394
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||||  ||||  |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  47540468 gttcctgttgtagtatctatagcacactttgtgcgttagggactgcattgttatataatttcattttggcttttt 47540394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 5817769 - 5817853
Alignment:
Q  223 taattttttgttcctgtt-gtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||| || ||||||||| |||||||||||| |||| | |||||| |||||||| |||||||||||||||| |||||||||||||    
T  5817769 taattcttggttcctgtttgtagtctctatggcacaccctgtgctctagggactgcattgttatataattttattttggcttttt 5817853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 8655678 - 8655745
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||| |||||||| || || || ||||||||||||||||||||||||||||||    
T  8655678 ttgtagtctctatggcacaccttgtgctctacgggctgcattgttatataatttcattttggcttttt 8655745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 7663838 - 7663912
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||| |||||||||| | |||| ||| ||||||||||| | | |||||||||||| |||||||||||||||    
T  7663838 gttcctgtagtagtctctaaggcacaccttatgctttagggattgctttgttatataatctcattttggcttttt 7663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 13448022 - 13447948
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  13448022 gttcctgctgtagtctctatggcacaccttgtgctttagggactgcattggtatataatttcattttggcgtttt 13447948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 32004523 - 32004449
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||||||||||||||||| ||||  ||||||| |||||||| |||||||||||||||| |||||||||||||    
T  32004523 gttcctgttgtagtctctatggcacacgttgtgctctagggactgcattgttatataattttattttggcttttt 32004449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 38542811 - 38542885
Alignment:
Q  229 tttgttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggctt 303  Q
    ||||||||||| |||||||||| | |||| |||||||| |||||||| | ||||||||||||| |||||||||||    
T  38542811 tttgttcctgtagtagtctctaaggcacaccttgtgctctagggactgctttgttatataattccattttggctt 38542885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 30167945 - 30168019
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||| ||| ||||| |||| | |||| ||||||||||||||||| | |||||||||||| |||||||||||||||    
T  30167945 gttcgtgtagtagtttctaaggcacaccttgtgctttagggactgctttgttatataatctcattttggcttttt 30168019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 4644555 - 4644481
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||| |||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  4644555 gttcttgttgtagtctctatggcacaccttgtgctctagggactgcattgttatataatttcgttttggcttttt 4644481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 21527696 - 21527629
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||| |||||||| |||||||| || |||||||||||||||||||||||||||    
T  21527696 ttgtagtctctatggcacaccttgtgctctagggactgcactgttatataatttcattttggcttttt 21527629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 9528337 - 9528425
Alignment:
Q  219 ggtgtaattttttgttcctgtt-gtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||| | || ||||||||| |||||||||||| |||| ||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  9528337 ggtgtaactcttggttcctgtttgtagtctctatggcacaccttatgctctagggactgcattgttatataatttcattttagcttttt 9528425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 52336203 - 52336131
Alignment:
Q  234 tcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||| |||||||| ||||  ||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  52336203 tcctgttgtaatctctatggcacacattgtgctctagagactgcattgttatataatttcattttggcttttt 52336131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 14366233 - 14366296
Alignment:
Q  243 agtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||| |||| |||||||| |||||| | |||||||||||||||| |||||||||||||    
T  14366233 agtctctatggcacaccttgtgctctagggattgcattgttatataattttattttggcttttt 14366296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 47115826 - 47115756
Alignment:
Q  236 ctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||||||||||| |||||| |||||||| || | ||| |||| ||||||||||||||||| |||||||    
T  47115826 ctgttgtagtctctaagacacaccttgtgctctaagaacttcattattatataatttcattttagcttttt 47115756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 48266323 - 48266389
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggctttt 305  Q
    |||||||||||||| ||||  ||||||| |||| | | |||||||||||||||||||||||||||||    
T  48266323 ttgtagtctctatggcacacattgtgctctaggaattgcattgttatataatttcattttggctttt 48266389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 36305325 - 36305252
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||| |||||||||| | |||| |||||||| ||||||||   |||||||||| |||||||||||||||||    
T  36305325 gttcctgtggtagtctctaaggcacaccttgtgctctagggactgttttgttatata-tttcattttggcttttt 36305252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 36928708 - 36928635
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||| | |||||||||| | |||| |||||||| |||||||| | |||||||||| |||||||||||||||||    
T  36928708 gttcctatggtagtctctaaggcacaccttgtgctctagggactgctttgttatata-tttcattttggcttttt 36928635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 22818 - 22885
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||||| ||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||    
T  22818 ttgtagtctgtatgacacaccttgtgctctagggactgtattgttatataatttcattttggcttttt 22885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 19385307 - 19385381
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||| |||||||||||||| |||| ||| |||||||||||||  |||||||||||||||||||| ||||||||    
T  19385307 gttcctattgtagtctctatggcacaccttatgctttagggactgtattgttatataatttcatttcggcttttt 19385381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 7451893 - 7451820
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||| | |||||||||| | |||| |||||||| |||||||| | |||||||||| |||||||||||||||||    
T  7451893 gttcctatggtagtctctaaggcacagcttgtgctctagggactgctttgttatata-tttcattttggcttttt 7451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 135241 - 135308
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||  |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  135241 ttgtagtctctatggcacgccttgtgctctaggggctgcattgttatataatttcattttggcttttt 135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 313068 - 313135
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||  |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  313068 ttgtagtctctatggcacgccttgtgctctaggggctgcattgttatataatttcattttggcttttt 313135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 328522 - 328589
Alignment:
Q  239 ttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||||||||| |||  |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  328522 ttgtagtctctatggcacgccttgtgctctaggggctgcattgttatataatttcattttggcttttt 328589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 321785 - 321814
Alignment:
Q  277 cattgttatataatttcattttggcttttt 306  Q
    ||||||||||||||||||||||||||||||    
T  321785 cattgttatataatttcattttggcttttt 321814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 15654305 - 15654376
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggctt 303  Q
    |||||||| |||||||||| |||||| |||||||| |||||||| | |||||||||||| ||||||||||||    
T  15654305 gttcctgtagtagtctctaagacacaccttgtgctctagggactgctttgttatataatctcattttggctt 15654376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 9534187 - 9534140
Alignment:
Q  259 cttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  9534187 cttgtgctctagggactatattgttatataatttcattttggcttttt 9534140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 19402756 - 19402686
Alignment:
Q  236 ctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||| |||||||||| | |||| |||||||| |||||||| | |||||||||||| |||||||||||||||    
T  19402756 ctgtagtagtctctaaggcacaccttgtgctctagggactgctttgttatataatctcattttggcttttt 19402686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 21277650 - 21277723
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||| ||||| |||| | |||| |||||||| |||||||| | |||||||||| |||||||||||||||||    
T  21277650 gttcctgtggtagtgtctaaggcacaccttgtgctctagggactgctttgttatata-tttcattttggcttttt 21277723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 46623243 - 46623170
Alignment:
Q  233 ttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    ||||||| |||||||||| ||||||  || |||| |||||||| | |||||||||||| |||||||| ||||||    
T  46623243 ttcctgtagtagtctctaagacacactttatgctgtagggactgctttgttatataatctcattttgacttttt 46623170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 7215 - 7141
Alignment:
Q  232 gttcctgttgtagtctctatgacacatcttgtgctttagggactacattgttatataatttcattttggcttttt 306  Q
    |||||||| |||||||||| | |||| ||| ||||||||||| | | |||||||||||| |||||||||||||||    
T  7215 gttcctgtagtagtctctaaggcacaccttatgctttagggattgctttgttatataatctcattttggcttttt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University