View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12589_low_1 (Length: 461)

Name: NF12589_low_1
Description: NF12589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12589_low_1
NF12589_low_1
[»] chr7 (6 HSPs)
chr7 (6-440)||(3367649-3368084)
chr7 (348-440)||(9891643-9891733)
chr7 (166-230)||(11496296-11496360)
chr7 (203-270)||(11496293-11496360)
chr7 (308-345)||(9891576-9891613)
chr7 (6-50)||(7710916-7710960)
[»] chr4 (3 HSPs)
chr4 (6-440)||(54188561-54188991)
chr4 (188-440)||(8570222-8570482)
chr4 (7-231)||(8570397-8570616)
[»] chr3 (2 HSPs)
chr3 (188-440)||(28696182-28696442)
chr3 (7-231)||(28696357-28696576)
[»] chr6 (2 HSPs)
chr6 (202-270)||(24229339-24229407)
chr6 (166-230)||(24229339-24229403)
[»] chr1 (1 HSPs)
chr1 (166-219)||(29491094-29491147)
[»] chr8 (2 HSPs)
chr8 (202-270)||(19884790-19884858)
chr8 (166-230)||(19884790-19884854)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 3367649 - 3368084
Alignment:
Q  6 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  3367649 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgccgctgcattc 3367748  T
Q  106 ttgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatca 205  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||||    
T  3367749 ttgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacctagaaaatgtcaattacatca 3367843  T
Q  206 aatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaaccaaagttaataatcaactta 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3367844 aatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaaccaaagttaataatcaactta 3367943  T
Q  306 -----aaatcaaatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatc-aaaattacctcatcaaatc 399  Q
         |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3367944 aaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatcaaaaattacctcatcaaatc 3368043  T
Q  400 agaagaattaatccaaaaaatccaaattctaactcagcgat 440  Q
    ||||||||||| |||||||||||||| ||| ||||||||||    
T  3368044 agaagaattaacccaaaaaatccaaaatcttactcagcgat 3368084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 440
Target Start/End: Original strand, 9891643 - 9891733
Alignment:
Q  348 gatttattatcacatcaccttaacttaaacatcaaaattacctcatcaaatcagaagaattaatccaaaaaatccaaattctaactcagcgat 440  Q
    ||||||||||  ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |  |||||| |||||||||||||||||||    
T  9891643 gatttattatatcatcaacttaacttaaacatcaaaa-tacctcataaaatcagaagaattaa-ctcaaaaattcaaattctaactcagcgat 9891733  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 11496296 - 11496360
Alignment:
Q  166 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 230  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||    
T  11496296 aatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 11496360  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 11496293 - 11496360
Alignment:
Q  203 tcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 270  Q
    |||||||| ||||| |||||| || |||||||||| ||||||||||| | |||||||||||| |||||    
T  11496293 tcaaatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 11496360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 9891576 - 9891613
Alignment:
Q  308 atcaaatccaataaacctagaaatatcaagttatgaat 345  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9891576 atcaaatcaaataaacctagaaatatcaagttatgaat 9891613  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 7710960 - 7710916
Alignment:
Q  6 agtcaaattatcaaacacctgataggcagcacaataataccttgc 50  Q
    |||||||||||||||||||| ||| ||| |||||| |||||||||    
T  7710960 agtcaaattatcaaacacctcatatgcaacacaatcataccttgc 7710916  T

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Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 54188561 - 54188991
Alignment:
Q  6 agtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattc 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||     
T  54188561 agtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgccgctgcattt 54188660  T
Q  106 ttgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatca 205  Q
    || | |||||||||||||||||||| |||||||||||||||||||||||||||||||||     | ||||||||||||||||||||||||||||||||||    
T  54188661 tttatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaata-----agaatcaacttaacctagaaaatgtcaattacatca 54188755  T
Q  206 aatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaaccaaagttaataatcaactta 305  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54188756 aatcagaatcaaattaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaaccaaagttaataatcaactta 54188855  T
Q  306 aaatcaaatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacat-caaaattacctcatcaaatcagaag 404  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  54188856 aaatcaaatcaaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacataaaaaattacctcatcaaatcagaag 54188955  T
Q  405 aattaatccaaaaaatccaaattctaactcagcgat 440  Q
    |||||| |||||||||||||||| | ||||||||||    
T  54188956 aattaacccaaaaaatccaaatttttactcagcgat 54188991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 188 - 440
Target Start/End: Complemental strand, 8570482 - 8570222
Alignment:
Q  188 aaaatgtcaattacatcaaa--tcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaac 285  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8570482 aaaatctcaattacatcaaaaatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaac 8570383  T
Q  286 caaagttaataatcaacttaaaatca-----aatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatc 380  Q
    ||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8570382 caaagttaataatcaacttaaaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatc 8570283  T
Q  381 -aaaattacctcatcaaatcagaagaattaatccaaaaaatccaaattctaactcagcgat 440  Q
     |||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  8570282 aaaaattacctcatcaaatcagaagaattaacccaaaaaatccaaaatcttactcagcgat 8570222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 8570616 - 8570397
Alignment:
Q  7 gtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattct 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  8570616 gtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgtcgctgcattct 8570517  T
Q  107 tgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatcaa 206  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || |||||||||||| ||||||||||||| | ||||||    
T  8570516 tgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacttagaaaatgtcaactgcatcaa 8570422  T
Q  207 atcaaaatcaacttaacttagaaaa 231  Q
    |||| |||||||||||| |||||||    
T  8570421 atcagaatcaacttaacctagaaaa 8570397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 188 - 440
Target Start/End: Complemental strand, 28696442 - 28696182
Alignment:
Q  188 aaaatgtcaattacatcaaa--tcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaaagtaaatttcttaac 285  Q
    ||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  28696442 aaaatctcaattacatcaaaaatcagaatcaacttaacttagaaaatgtcaactgcatcaaatcagaatcaacttaacctagaaaagtaaatttcttaac 28696343  T
Q  286 caaagttaataatcaacttaaaatca-----aatccaataaacctagaaatatcaagttatgaattggatttattatcacatcaccttaacttaaacatc 380  Q
    ||||||||||||||||||||||||||     |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28696342 caaagttaataatcaacttaaaatcaaatcaaatcaaataaacctagaaatatcaagttataaattggatttattatcacatcaccttaacttaaacatc 28696243  T
Q  381 -aaaattacctcatcaaatcagaagaattaatccaaaaaatccaaattctaactcagcgat 440  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  28696242 aaaaattacctcatcaaatcagaagaattaacccaaaaaatccaaattcttactcagcgat 28696182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 28696576 - 28696357
Alignment:
Q  7 gtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaatcgtaagttcaatgccgctgcattct 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||    
T  28696576 gtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaataatgaacaagcttcaactgcaattggaagttcaatgtcgctgcattct 28696477  T
Q  107 tgacgctctgatggcggtggttacggaattcgataaaatctcaattacatcaaaaatataatcataatcaacttaacctagaaaatgtcaattacatcaa 206  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     || |||||||||||| ||||||||||||| | ||||||    
T  28696476 tgatgctctgatggcggtggttaccgaattcgataaaatctcaattacatcaaaaat-----cagaatcaacttaacttagaaaatgtcaactgcatcaa 28696382  T
Q  207 atcaaaatcaacttaacttagaaaa 231  Q
    |||| |||||||||||| |||||||    
T  28696381 atcagaatcaacttaacctagaaaa 28696357  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 24229407 - 24229339
Alignment:
Q  202 atcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 270  Q
    ||||||||| ||||| |||||| || |||||||||| ||||||||||| | |||||||||||| |||||    
T  24229407 atcaaatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 24229339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 24229403 - 24229339
Alignment:
Q  166 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 230  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||  ||||||||||| ||||||    
T  24229403 aatcagaatcatcttaacctaaaaaatgtcaattgcatcaaatcagtatcaacttaacctagaaa 24229339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 29491094 - 29491147
Alignment:
Q  166 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaact 219  Q
    ||||| ||||||||||||||| ||||  |||||| |||||||||||||||||||    
T  29491094 aatcagaatcaacttaacctaaaaaacttcaattgcatcaaatcaaaatcaact 29491147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 19884858 - 19884790
Alignment:
Q  202 atcaaatcaaaatcaacttaacttagaaaatgtcaactgcatcaaatcggaatcaacttaaccaagaaa 270  Q
    ||||||||| ||||| |||||| || |||||||||| ||||| ||||| | |||||||||||| |||||    
T  19884858 atcaaatcagaatcatcttaacctaaaaaatgtcaattgcattaaatcagtatcaacttaacctagaaa 19884790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 19884854 - 19884790
Alignment:
Q  166 aatcataatcaacttaacctagaaaatgtcaattacatcaaatcaaaatcaacttaacttagaaa 230  Q
    ||||| ||||| ||||||||| |||||||||||| ||| ||||||  ||||||||||| ||||||    
T  19884854 aatcagaatcatcttaacctaaaaaatgtcaattgcattaaatcagtatcaacttaacctagaaa 19884790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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