View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12589_low_2 (Length: 423)
Name: NF12589_low_2
Description: NF12589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12589_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 140 - 401
Target Start/End: Original strand, 26880280 - 26880544
Alignment:
| Q |
140 |
acaagtcacattccagataactccatcaacatctatctctgatttaacaacggcatgatccttatttggagataatttatctgaatcaatttgtattatc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880280 |
acaagtcacattccagataactccatcaacatctatctctgatttaacagcggcatgatccttatttggagataatttatctgaatcaatttgtattatc |
26880379 |
T |
|
| Q |
240 |
atccatcaatctaaagaagtacaacaaatt---tctttaccacctttaacctcttcatcaccttacaacacataaaaagccacaaagtattctccatgct |
336 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| | || || |||| ||||| || |||||||| |||||||| ||||||| | | ||||||| |
|
|
| T |
26880380 |
atccatcaagctaaagaagtagaacaaattatttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgct |
26880479 |
T |
|
| Q |
337 |
tatcgtgccgctacaacgtttgaaactacaatgttagacgaaatttcaatagcatctataatgac |
401 |
Q |
| |
|
|| ||| |||||| || ||||| |||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
26880480 |
gatggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgac |
26880544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 26880056 - 26880182
Alignment:
| Q |
18 |
gtttcaaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctactcctacacagcggttcattcctttaaataaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26880056 |
gtttcaaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctgctcctacacagcggttcattcctttaaataaacc |
26880155 |
T |
|
| Q |
118 |
cagcgtaaattgtataatatgtacaag |
144 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26880156 |
cagcgtaaattgtataatatgtacaag |
26880182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 40249819 - 40249897
Alignment:
| Q |
140 |
acaagtcacattccagataactccatcaacatctatctctgatttaacaacggcatgatccttatttggagataattta |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40249819 |
acaagtcacattccagatacttccatcaacatctatctctgatttaacaacagcatgatccttatttggagataattta |
40249897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University