View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12589_low_4 (Length: 346)
Name: NF12589_low_4
Description: NF12589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12589_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 25527819 - 25527670
Alignment:
| Q |
182 |
aacaagcagcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
281 |
Q |
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| T |
25527819 |
aacaagcagcaacggcggagcctcagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccat |
25527720 |
T |
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| Q |
282 |
ggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacct |
331 |
Q |
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| T |
25527719 |
ggcccgccagtcggcgttctcagcaacgaatcgtccgacggtgttcacct |
25527670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 25535841 - 25535699
Alignment:
| Q |
189 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgtgtcacgtcattgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
288 |
Q |
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| T |
25535841 |
agcaacggcggagccccagcctcctcctgaagaactccacacgcgcgtcagatcgttgattcgctccggcaacctcgacgctgcctctgccatggcccgc |
25535742 |
T |
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| Q |
289 |
cagtcggcgttctcagcaacgactcgtccgacggtgttcacct |
331 |
Q |
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| T |
25535741 |
cagtcgacgttctcagcaacaactcgtccaactgtgttcacct |
25535699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 25527981 - 25527879
Alignment:
| Q |
20 |
tatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacgaaattttagggtttcaaactcaacaatgtcactctgtcg |
119 |
Q |
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| T |
25527981 |
tatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacgaaattttagggtttcaaactcaacaatgtcactctttcg |
25527882 |
T |
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| Q |
120 |
cca |
122 |
Q |
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||| |
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| T |
25527881 |
cca |
25527879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 25514657 - 25514742
Alignment:
| Q |
246 |
gattcgctccggcaacctcgacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacct |
331 |
Q |
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| T |
25514657 |
gattcgctccggcaacctcaacgctgcctctgccatggcccgccagtcggcgttctcagcaacgactcgtccgacggtgttcacct |
25514742 |
T |
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