View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_high_10 (Length: 432)
Name: NF1258_high_10
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 193 - 422
Target Start/End: Complemental strand, 39110853 - 39110624
Alignment:
| Q |
193 |
ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaatttcattgctagttagtctcgcataataaactttgac |
292 |
Q |
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| T |
39110853 |
ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaattccattgctagttagtctcgcataataaactttgac |
39110754 |
T |
|
| Q |
293 |
acatttacatgaaactttattttgttaacaccagcaatactagttacatcatgtnnnnnnncgaaaagtacatgtacattttcaatgaaattcttttatt |
392 |
Q |
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| T |
39110753 |
acatttacatgaaactttattttgttaacaccagcaatactagttacatcatgtaaaaaaacgaaaagtacatgtacattttcaatgaaattcttttatt |
39110654 |
T |
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| Q |
393 |
gaaataatacaaacttcattattattcatc |
422 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39110653 |
gaaataatacaaacttcattattattcatc |
39110624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 39111016 - 39110949
Alignment:
| Q |
30 |
gacaatttatgagacaatcataatttacaatgaaaacgaagtattgacaaaaaatcaaagcaatagag |
97 |
Q |
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| T |
39111016 |
gacaacttatgagacaatcataatttacaatgaaaatgaagtattgacaaaaaatcaaagcaatagag |
39110949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 14707261 - 14707328
Alignment:
| Q |
30 |
gacaatttatgagacaatcataatttacaatgaaaacg-aagtattgacaa-aaaatcaaagcaatag |
95 |
Q |
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| T |
14707261 |
gacaacttatgagacaatcataatttacaaagaaaaagtaggtattgacaagaaaatcaaagcaatag |
14707328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 35897830 - 35897786
Alignment:
| Q |
53 |
tttacaatgaaaacgaagtattgaca-aaaaatcaaagcaataga |
96 |
Q |
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| T |
35897830 |
tttacaatgaaaatgaagtattgacacaaaaatcaaagcaataga |
35897786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 6596482 - 6596415
Alignment:
| Q |
31 |
acaatttatgagacaatcataatttacaatgaaaacgaagtattgaca-aaaaatcaaagcaatagag |
97 |
Q |
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| T |
6596482 |
acaatttatgggataatcataatttacaaagaaaatgaggtattaacacaaaaaccaaagcaatagag |
6596415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 4023268 - 4023303
Alignment:
| Q |
30 |
gacaatttatgagacaatcataatttacaatgaaaa |
65 |
Q |
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| T |
4023268 |
gacaatttatgagacaatcataatttacaaagaaaa |
4023303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 47721562 - 47721493
Alignment:
| Q |
30 |
gacaatttatgagacaatcataatttacaatgaaaacg-aagtattgaca-aaaaatcaaagcaatagag |
97 |
Q |
| |
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||||| ||||| ||||| |||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
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| T |
47721562 |
gacaacttatgggacaaccataatttacaaagaaaaagtaagtattgacacgaaaatcaaagcaatagag |
47721493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 47728554 - 47728485
Alignment:
| Q |
30 |
gacaatttatgagacaatcataatttacaatgaaaacg-aagtattgaca-aaaaatcaaagcaatagag |
97 |
Q |
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||||| ||||| ||||| |||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
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| T |
47728554 |
gacaacttatgggacaaccataatttacaaagaaaaagtaagtattgacacgaaaatcaaagcaatagag |
47728485 |
T |
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