View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_high_17 (Length: 380)
Name: NF1258_high_17
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 29 - 308
Target Start/End: Complemental strand, 4677080 - 4676798
Alignment:
| Q |
29 |
acatgtaggctgtagcgatggaaatatataa---ataggtcacaacaagaaataatgaaaacaagggaagggtaaaggaaagtgcaaagaaaagagaata |
125 |
Q |
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| T |
4677080 |
acatgtaggctgtagcgatggaaatatataataaataggtcacaccaagaaataatgaaaacaagggaagggtaaaggaaagtgcaaagaaaagagaaca |
4676981 |
T |
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| Q |
126 |
tgagaatcgaaaaagataaatagtttgttgcaagctcccttgccgttcctctttttctattaagatattgttcttattatcatgaaacttaactagtttt |
225 |
Q |
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| T |
4676980 |
tgagaatcgaaaaagataaatagtttgttgcaagctcccttgccgttcctctttttttattaagatattgttcttattatcatgaaacttaactagtttt |
4676881 |
T |
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| Q |
226 |
ttaattaaagtcttatatccttgctatagatactagtaaatagacgggtactaactgaggtaccctcacatgaacactattat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4676880 |
ttaattaaagtcttatatccttgctatagatactagtggatagacgggtactaactgagttaccctcacatgaacactattat |
4676798 |
T |
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