View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_high_24 (Length: 336)
Name: NF1258_high_24
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 19582926 - 19582600
Alignment:
| Q |
1 |
cccaatcctctccaacccagccacacccatcccctcaagactctccactaaagcgaaaccatccactacaagatcctcagccatcatcaccaaagcgaca |
100 |
Q |
| |
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|||||| |||| |||| |||||||| ||||| ||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
19582926 |
cccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgaca |
19582827 |
T |
|
| Q |
101 |
tctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatcctcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
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| T |
19582826 |
tctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagacccttta |
19582727 |
T |
|
| Q |
201 |
ccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582726 |
ccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattag |
19582627 |
T |
|
| Q |
301 |
aatcatcagcaagtaataatctctctg |
327 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
19582626 |
aatcatcagcaagtaataatccctctg |
19582600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 19590659 - 19590985
Alignment:
| Q |
1 |
cccaatcctctccaacccagccacacccatcccctcaagactctccactaaagcgaaaccatccactacaagatcctcagccatcatcaccaaagcgaca |
100 |
Q |
| |
|
|||||| |||| |||| |||||||| ||||| ||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
19590659 |
cccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaagcgaca |
19590758 |
T |
|
| Q |
101 |
tctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatcctcta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
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| T |
19590759 |
tctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagacccttta |
19590858 |
T |
|
| Q |
201 |
ccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590859 |
ccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatacattag |
19590958 |
T |
|
| Q |
301 |
aatcatcagcaagtaataatctctctg |
327 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
19590959 |
aatcatcagcaagtaataatccctctg |
19590985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 19586794 - 19586846
Alignment:
| Q |
253 |
catcagacccttcacccgtctcatcgggatctccaccggatacattagaatca |
305 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||||||| |||||||||| |
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|
| T |
19586794 |
catcagaaccttcacccgtctcatcaggctctccaccggatttattagaatca |
19586846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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