View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_high_25 (Length: 336)
Name: NF1258_high_25
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 4001528 - 4001689
Alignment:
| Q |
17 |
tatcaacggatgaataaggaaataagttatcaaattttaaaatcaaaatgtaactgctttttgatattaaaacaaccgcaccattgatggaggaaatatc |
116 |
Q |
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| T |
4001528 |
tatcaacggatgaataaggaaataagttatcaaattttaaaatcaaaatgtaactgctctttgatattaaaacaaccgcactattgatggaggaaatatc |
4001627 |
T |
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| Q |
117 |
ggagagggaatagagagattcatgactataaattttagttccctatattaacttccttctgg |
178 |
Q |
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| T |
4001628 |
ggagagggaatagagagattcatgactataaattttagttctctatgttaacatccttctgg |
4001689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 32724184 - 32724326
Alignment:
| Q |
32 |
aaggaaataagttatcaaattttaaaatcaaaatgtaactgctttttgatattaaaacaaccgcaccattgatggaggaaatatcggagagggaatagag |
131 |
Q |
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| T |
32724184 |
aaggaaataagttatcaaattttaaaatcaaaatgtaactgatctttcatatt-aaacaaccgcagtatttataga-gagatatcagagaggggat--ag |
32724279 |
T |
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| Q |
132 |
agattcatgactataaattttagttccctatattaacttccttctgg |
178 |
Q |
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| T |
32724280 |
agattcatgagtataaattttggttccctatattaactttcttctgg |
32724326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 32724365 - 32724454
Alignment:
| Q |
226 |
gttggttatacaccttcaacattgatggtttacatttgtcagtttctaattgaagggacaagagtcatatgacggaaacataggttaattg |
316 |
Q |
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| T |
32724365 |
gttggtgatacaccttcaacattgatggtttacatt-gccaatttctaattgaagggacaaaagtcatctaacggaaacataagttaattg |
32724454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 4001737 - 4001789
Alignment:
| Q |
226 |
gttggttatacaccttcaacattgatggtttacatttgtcagtttctaattga |
278 |
Q |
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| T |
4001737 |
gttggttatacaccttcaatattgatggtttacatttgtcagtttctaattga |
4001789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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