View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1258_high_28 (Length: 299)

Name: NF1258_high_28
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1258_high_28
NF1258_high_28
[»] chr3 (5 HSPs)
chr3 (19-213)||(8890091-8890285)
chr3 (41-169)||(6017593-6017722)
chr3 (27-204)||(31139901-31140078)
chr3 (41-113)||(6013265-6013337)
chr3 (49-152)||(4284426-4284530)
[»] chr7 (1 HSPs)
chr7 (28-164)||(23394278-23394413)
[»] chr8 (4 HSPs)
chr8 (19-144)||(33307071-33307196)
chr8 (47-155)||(13540243-13540352)
chr8 (47-155)||(13684121-13684231)
chr8 (49-155)||(29968944-29969048)
[»] chr1 (2 HSPs)
chr1 (40-155)||(3859347-3859464)
chr1 (97-155)||(28552874-28552933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-155)||(357357-357494)
[»] chr6 (2 HSPs)
chr6 (19-155)||(11645668-11645805)
chr6 (97-155)||(244161-244220)
[»] chr5 (2 HSPs)
chr5 (62-125)||(22826842-22826905)
chr5 (97-144)||(26265975-26266023)
[»] chr4 (1 HSPs)
chr4 (53-155)||(45561617-45561715)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 8890091 - 8890285
Alignment:
Q  19 gataattcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8890091 gataagtcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 8890190  T
Q  119 cattttcaggacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgtgtgcatgtgcatagaaaa 213  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  8890191 cattttcaaaacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgcgtacatgtgcatagaaaa 8890285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 6017593 - 6017722
Alignment:
Q  41 ttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcagga-caaataatga 139  Q
    ||||| ||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||| |||||||||||||||||| || ||||  |||||||||    
T  6017593 ttttagcatttgaattcaataatatttgtggaactttagtcttgctttagagctattttactgcaaaatattagttttcatatttaggataaaataatga 6017692  T
Q  140 agaaaaggaagaatttccaagaccataaaa 169  Q
    |||||||||||||||| |||||||||||||    
T  6017693 agaaaaggaagaattttcaagaccataaaa 6017722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 31140078 - 31139901
Alignment:
Q  27 ttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttca 126  Q
    ||||||||| || |||||| | |||||||| ||||||||||||| || ||||||| || |||| || || ||||||| ||||||| | |||| |||||||    
T  31140078 ttaatttagtgtgtttttagcgtttgaatttaataatatttgtgaaactttggtcttattttatagttattttactataaaatatcaatttttattttca 31139979  T
Q  127 ggacaaataatgaagaaaaggaagaatttccaagaccataaaacttatcacggccttgagcacgaccgtgtgcatgtg 204  Q
     ||||||||| |||||||| ||||||||| ||||||||  ||| | | |||| || ||| ||| ||||||||||||||    
T  31139978 cgacaaataacgaagaaaatgaagaattttcaagaccaggaaattgagcacgaccctgaacaccaccgtgtgcatgtg 31139901  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 6013265 - 6013337
Alignment:
Q  41 ttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatatta 113  Q
    ||||| ||||||||||||||||||||||||||| ||| ||| | ||||||||||| |||||| ||||||||||    
T  6013265 ttttagcatttgaattcaataatatttgtggaactttagtcttgctttagagctattttactgcaaaatatta 6013337  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 4284426 - 4284530
Alignment:
Q  49 tttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcagga-caaataatgaagaaaagg 147  Q
    |||||||| ||||| |||||||| ||||| ||  |||||||||  || ||||||||||| | || ||||| ||||||| || ||||||||||||||||||    
T  4284426 tttgaattaaataaaatttgtgggattttagttttactttagaaatattttactacaaagtgttggtttttattttcaagatcaaataatgaagaaaagg 4284525  T
Q  148 aagaa 152  Q
    |||||    
T  4284526 aagaa 4284530  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 23394278 - 23394413
Alignment:
Q  28 taatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcag 127  Q
    |||||||| || |||||| ||||||||||||||||||| ||||||  ||||||  || |||| ||||| |||||||||||||||||||||| ||||| |     
T  23394278 taatttagtgtgtttttagcatttgaattcaataatatgtgtggagctttggtgtta-tttatagctattttactacaaaatattagttttaatttttaa 23394376  T
Q  128 gacaaataatgaagaaaaggaagaatttccaagacca 164  Q
    ||||||||||||||||||||||||||||  |||||||    
T  23394377 gacaaataatgaagaaaaggaagaatttttaagacca 23394413  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 33307071 - 33307196
Alignment:
Q  19 gataattcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 118  Q
    ||||| ||||||| ||| || |||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||| |||| ||||||| |||||||||    
T  33307071 gataagtcttaatgtagggtgtttttagcatttgaattcaataatatttgtggatctttggtcttactttagagctattttattacaaaaaattagtttt 33307170  T
Q  119 cattttcaggacaaataatgaagaaa 144  Q
    ||||| ||   |||| ||||||||||    
T  33307171 catttccaaaccaaacaatgaagaaa 33307196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 13540352 - 13540243
Alignment:
Q  47 catttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcaggac-aaataatgaagaaaa 145  Q
    ||||| |||| |||||||||| ||||  ||||||| |||||| |||||| |||||| ||||| ||||||||| ||||| ||||| ||||||  |||||||    
T  13540352 catttcaatttaataatatttttggatctttggtcttactttggagctattttacttcaaaacattagtttttattttgaggaccaaataaacaagaaaa 13540253  T
Q  146 ggaagaattt 155  Q
    ||||||||||    
T  13540252 ggaagaattt 13540243  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 13684121 - 13684231
Alignment:
Q  47 catttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttc-aggac-aaataatgaagaaa 144  Q
    ||||| |||| |||||||||| ||||  ||||||| |||||| |||||| |||||| ||||| ||||||||| |||||  ||||| ||||||  ||||||    
T  13684121 catttcaatttaataatatttttggatctttggtcttactttggagctattttacttcaaaacattagtttttattttggaggaccaaataaacaagaaa 13684220  T
Q  145 aggaagaattt 155  Q
    |||||||||||    
T  13684221 aggaagaattt 13684231  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 29969048 - 29968944
Alignment:
Q  49 tttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcagga-caaataatgaagaaaagg 147  Q
    |||||||| ||||| ||| |||||||||| ||  |||||| |||||| ||||||||||| | |||||||| ||||| |||| ||||||||  | ||||||    
T  29969048 tttgaattaaataaaattggtggaattttagtt-tactttggagctattttactacaaagtgttagtttttattttgaggatcaaataat--aaaaaagg 29968952  T
Q  148 aagaattt 155  Q
    ||||||||    
T  29968951 aagaattt 29968944  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 3859464 - 3859347
Alignment:
Q  40 tttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcag--gacaaataat 137  Q
    |||||| ||||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||||||||  ||||||||||||||||||   | |||||||    
T  3859464 tttttagcatttgaattcaataatatttatggaactctggtcttactttagagctaatttactacaaatcattagttttcattttcagaataaaaataat 3859365  T
Q  138 gaagaaaaggaagaattt 155  Q
    ||||| || |||||||||    
T  3859364 gaagataatgaagaattt 3859347  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 28552874 - 28552933
Alignment:
Q  97 tttactacaaaatattagttttcattttcagga-caaataatgaagaaaaggaagaattt 155  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||    
T  28552874 tttactacaaaacattagttttcattttcaggaccaaataatgaagaaaaggatgaattt 28552933  T

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Target: scaffold0003 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 357494 - 357357
Alignment:
Q  19 gataattcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 118  Q
    ||||| |||| |||||| ||||||||| |||||||||| |||||||||| |  || ||| ||| || | |||||||| ||||||| | || |||||||||    
T  357494 gataagtcttgatttagggtatttttagcatttgaattaaataatatttattaaaattttgtcttattatagagctattttactatagaacattagtttt 357395  T
Q  119 cattttcagga-caaataatgaagaaaaggaagaattt 155  Q
    |||||||||||  |||||||||||||||| ||||||||    
T  357394 cattttcaggataaaataatgaagaaaagaaagaattt 357357  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 11645805 - 11645668
Alignment:
Q  19 gataattcttaatttagcgtatttttaacatttgaattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagtttt 118  Q
    ||||| ||| |||||||  | |||||| |||||||||| ||||| ||| |||||||||| ||  || ||| |||  | ||||||||||| | ||||||||    
T  11645805 gataagtctaaatttagtatgtttttaccatttgaattaaataaaattggtggaattttagttttattttggagtaattttactacaaagtgttagtttt 11645706  T
Q  119 cattttcagga-caaataatgaagaaaaggaagaattt 155  Q
     |||||||  | ||||||||||||||||||||||||||    
T  11645705 tattttcataatcaaataatgaagaaaaggaagaattt 11645668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 244220 - 244161
Alignment:
Q  97 tttactacaaaatattagttttcattttcagga-caaataatgaagaaaaggaagaattt 155  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||| |||||| |||||    
T  244220 tttactataaaacattagttttcattttcaggaccaaataatgaagagaaggaataattt 244161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 22826905 - 22826842
Alignment:
Q  62 atatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttc 125  Q
    |||||||||||| ||||||| |||||||||| || |||||||||||| | ||||||||||||||    
T  22826905 atatttgtggaactttggtcttactttagagatattttactacaaaacaatagttttcattttc 22826842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 26265975 - 26266023
Alignment:
Q  97 tttactacaaaatattagttttcattttcagga-caaataatgaagaaa 144  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||    
T  26265975 tttactacaaaacattagttttcattttcaggaccaaataataaagaaa 26266023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 45561715 - 45561617
Alignment:
Q  53 aattcaataatatttgtggaattttggtcatactttagagctactttactacaaaatattagttttcattttcaggacaaataatgaagaaaaggaagaa 152  Q
    |||||||||||||||||| || ||||||| |||| |||||||| |||||| ||    | ||||||||||||||| || ||||||||||| |||  |||||    
T  45561715 aattcaataatatttgtgcaactttggtcttactctagagctattttactgca----actagttttcattttcaagataaataatgaagcaaataaagaa 45561620  T

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