View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_high_3 (Length: 613)
Name: NF1258_high_3
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 198 - 584
Target Start/End: Original strand, 43029751 - 43030131
Alignment:
| Q |
198 |
agaatcattctgtatctacatcccaaaatggagaagaccatgattctgtcttttctccacctccttcttctccttctcccagatgcagcaaaagctgcca |
297 |
Q |
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| T |
43029751 |
agaatcattctgtatctacatcccaaaatggagaagaccatgattctgtcttttctccacctccttcttctccttctcccaaatccagcaaaagctgcca |
43029850 |
T |
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| Q |
298 |
ttggtataggcattggtgttggtgttggcattggaattggcattggcaatggcaatgatggtcctaacatcccaggatcttcaggatcatctgtgtcaaa |
397 |
Q |
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| T |
43029851 |
ttggtatagccattgg------tgttggcattggcattggcattggcaatggcaatgatggtcctaacatcccaggatcttcaggatcatctgtgtcaaa |
43029944 |
T |
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| Q |
398 |
tctaaacaatgcctacaaagctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttct |
497 |
Q |
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| T |
43029945 |
tctaaacaatgcctacaaagctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttct |
43030044 |
T |
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| Q |
498 |
tataaaggaatcttttgtgacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacactt |
584 |
Q |
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| T |
43030045 |
tataaaggaatcttttgtgacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacactt |
43030131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 43029564 - 43029691
Alignment:
| Q |
11 |
caaaggcattaacattatataaaccaaagagaaagtgacaaatgagaaaacatgacactttttaaaaccaattggccccatcaatccatcactctgtgac |
110 |
Q |
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| T |
43029564 |
caaaggcattaacattacataaaccaaagagaaagtgacaaatgagaaaacatgacacttttaaaaaccaattggccccatcaatccatcactctgtgac |
43029663 |
T |
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| Q |
111 |
tatctgtctgtcttccagcaagtgagtg |
138 |
Q |
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| T |
43029664 |
tatctgtctgtcttccagcaagtgagtg |
43029691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 516
Target Start/End: Complemental strand, 34201790 - 34201693
Alignment:
| Q |
419 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
516 |
Q |
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| T |
34201790 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
34201693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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