View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1258_high_7 (Length: 489)

Name: NF1258_high_7
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1258_high_7
NF1258_high_7
[»] chr1 (7 HSPs)
chr1 (11-451)||(50059201-50059639)
chr1 (304-418)||(49061372-49061485)
chr1 (304-421)||(49053792-49053908)
chr1 (310-382)||(52282052-52282126)
chr1 (303-385)||(17458408-17458490)
chr1 (302-385)||(42263467-42263550)
chr1 (322-379)||(12634501-12634558)
[»] chr3 (7 HSPs)
chr3 (264-385)||(40574351-40574471)
chr3 (304-418)||(33709828-33709941)
chr3 (263-427)||(31362238-31362401)
chr3 (304-418)||(52653772-52653885)
chr3 (79-167)||(50914672-50914760)
chr3 (310-384)||(16729783-16729857)
chr3 (62-243)||(52653522-52653703)
[»] chr4 (6 HSPs)
chr4 (303-397)||(20251407-20251501)
chr4 (304-387)||(24391833-24391915)
chr4 (303-380)||(47078078-47078155)
chr4 (310-430)||(48779852-48779972)
chr4 (302-383)||(27538132-27538213)
chr4 (302-374)||(24129391-24129463)
[»] chr5 (6 HSPs)
chr5 (80-243)||(36202882-36203045)
chr5 (322-397)||(9080677-9080752)
chr5 (304-367)||(29006483-29006546)
chr5 (302-367)||(9851498-9851563)
chr5 (302-375)||(15205361-15205434)
chr5 (151-259)||(29006309-29006418)
[»] chr2 (3 HSPs)
chr2 (302-397)||(14218911-14219006)
chr2 (314-397)||(34681128-34681211)
chr2 (310-419)||(38327393-38327501)
[»] chr8 (6 HSPs)
chr8 (308-404)||(28696104-28696200)
chr8 (304-370)||(12729389-12729455)
chr8 (60-197)||(12729137-12729274)
chr8 (320-378)||(10085847-10085905)
chr8 (312-433)||(44729085-44729204)
chr8 (302-383)||(14546317-14546398)
[»] chr7 (3 HSPs)
chr7 (302-385)||(24870414-24870497)
chr7 (302-383)||(20463991-20464072)
chr7 (316-383)||(1840661-1840728)
[»] chr6 (3 HSPs)
chr6 (302-376)||(11931951-11932025)
chr6 (304-418)||(28612150-28612264)
chr6 (322-378)||(28072858-28072914)
[»] scaffold0007 (1 HSPs)
scaffold0007 (314-384)||(217757-217827)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 50059201 - 50059639
Alignment:
Q  11 cacagaccatgtggccatgttgaactatatactaacatctactatctactatttgtgtgaaaattttccaaaatatatttaaaaaattgcagtcgttaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50059201 cacagaccatgtggccatgttgaactatatactaacatctactatctactatttgtgtgaaaattttccaaaatatatttaaaaaattgcagtcgttaaa 50059300  T
Q  111 tagagacattatagagaagaggtgtaatgcttgaagatcaaagcaatgtaaccattcgtaaacaagctcttttaaaaagtggtttctggtcactaaaaga 210  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  50059301 tagagacattatagtgaagaggtgtaatgcttgaacatcaaagcaatgtaaccattcgtaaacaagctcttttaaaaagt-gtttctgttcactaaaaga 50059399  T
Q  211 cacaaggttttctataaataaagacactttggaaccaaacaaagatagatacaaaaaacacattcttgtgaatcaaaattctgtnnnnnnntaatactga 310  Q
    || ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  50059400 cataagattttctataaataaagacactttgaaaccaaacaaagatagatacaaaaaacacattcttgtgaatcaaaattctgt-aaaaaataatactga 50059498  T
Q  311 atcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacgt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50059499 atcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacgt 50059598  T
Q  411 ccaggatttcaaaatatcctaaaatgaattgctaatatgtt 451  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  50059599 ccaggatttcaaaatatcctaaaatgaattgttaatatgtt 50059639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 49061372 - 49061485
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 403  Q
    ||||| ||||||||||| |||||||||||||||||| |||||| ||| ||||||||||| ||||||| ||||| |||||| ||| | ||||||| |  ||    
T  49061372 atactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattg-tcgatatgtttggtgtgaatgtgcaa 49061470  T
Q  404 gtcacgtccaggatt 418  Q
     ||||||| ||||||    
T  49061471 atcacgtcaaggatt 49061485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 49053792 - 49053908
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 403  Q
    ||||| ||||||||||| | |||||||||||||||| ||||||  |||||||||||| | ||||||| ||||| |||||| | | | ||||||| |  ||    
T  49053792 atactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattg-tcgatatgcttggtgtgaatgtgcaa 49053890  T
Q  404 gtcacgtccaggatttca 421  Q
    |||||||| |||||||||    
T  49053891 gtcacgtcaaggatttca 49053908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 52282126 - 52282052
Alignment:
Q  310 aatcattctttattttctctagtgcacgagaga--aatttacagaactttattctataaactatcattgatcgat 382  Q
    ||||||||||| |||||||||||||| ||||||  |||| ||| ||||||||||| ||||||| |||||||||||    
T  52282126 aatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgat 52282052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 17458408 - 17458490
Alignment:
Q  303 aatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacg 385  Q
    |||||| |||||||||||  ||||||||||||||||||  |||  | | ||||||||| | ||||||||||||||||||||||    
T  17458408 aatactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacg 17458490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 42263550 - 42263467
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacg 385  Q
    |||||||  |||||||||| ||||||||||||||||||||||||  ||| |||||| || | |||| || ||||| ||||||||    
T  42263550 taatactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacg 42263467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 12634501 - 12634558
Alignment:
Q  322 ttttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatc 379  Q
    |||||| |||||||  ||||||||| ||||||||||||||| |||| || ||||||||    
T  12634501 ttttctttagtgcattagagaaattgacagaactttattctgtaaattaccattgatc 12634558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 40574471 - 40574351
Alignment:
Q  264 aaaaacacattcttgtgaatcaaaattctgtnnnnnnntaatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattcta 363  Q
    |||| ||||||||||||| |||||||||||        ||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||     
T  40574471 aaaatcacattcttgtgagtcaaaattctg-ccgaaaataatattaaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctg 40574373  T
Q  364 taaactatcattgatcgatacg 385  Q
    ||||||||||||||| ||||||    
T  40574372 taaactatcattgattgatacg 40574351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 33709828 - 33709941
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 403  Q
    ||||| ||||||||||| ||||||||||||||| |||||| || ||||||||||||||| ||||||| ||||| |||||||| | | ||||||| |  ||    
T  33709828 atactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattg-tcgatacgcttggtgtgaatgtgcaa 33709926  T
Q  404 gtcacgtccaggatt 418  Q
    |||||||| ||||||    
T  33709927 gtcacgtcaaggatt 33709941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 427
Target Start/End: Complemental strand, 31362401 - 31362238
Alignment:
Q  263 aaaaaacacattcttgtgaatcaaaattctgtnnnnnnntaatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattct 362  Q
    ||||| ||||||||||||| ||||||||||||       ||||||| |||  || |||||||| | |||||||||||  ||||| ||||||||||||| |    
T  31362401 aaaaatcacattcttgtgagtcaaaattctgtcgaaaa-taatactaaatttttttttattttttttagtgcacgaggaaaattgacagaactttatttt 31362303  T
Q  363 ataaactatcattgatcgatacgttggatgtgaatttataagtcacgtccaggatttcaaaatat 427  Q
     |||||||  || |||||||||||| | ||||||| |||||||  |||| ||||||||| |||||    
T  31362302 gtaaactactatcgatcgatacgtttggtgtgaatgtataagttccgtcaaggatttcacaatat 31362238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 52653772 - 52653885
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 403  Q
    ||||| ||||||||||  ||||||||||||||||||  ||||| ||||||||||||||| ||||||| ||||| |||||||  | ||||||||| |  ||    
T  52653772 atactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattg-tcgatacacttgatgtgaatgtgcaa 52653870  T
Q  404 gtcacgtccaggatt 418  Q
    |||||||| ||||||    
T  52653871 gtcacgtcaaggatt 52653885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 50914760 - 50914672
Alignment:
Q  79 caaaatatatttaaaaaattgcagtcgttaaatagagacattatagagaagaggtgtaatgcttgaagatcaaagcaatgtaaccattc 167  Q
    |||||||||||| |||| ||||| | ||||||||||||| || ||||| | |||||||||||||||  ||  |||||||| ||||||||    
T  50914760 caaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattc 50914672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 16729783 - 16729857
Alignment:
Q  310 aatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatac 384  Q
    ||||||||||| |||| | ||||||||||   ||||| ||| ||||||||| | |||||||||||||||||||||    
T  16729783 aatcattctttcttttatttagtgcacgaagaaaattgacataactttattttgtaaactatcattgatcgatac 16729857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 52653522 - 52653703
Alignment:
Q  62 tttgtgtgaaaattttccaaaatatatttaaaaaattgcagtcgttaaatagagacattatagagaagaggtgtaatgcttgaagatcaaagcaatgtaa 161  Q
    |||||| || || ||||||||||||||||  ||| ||||| |  ||||||| | || || ||| ||| ||||||| || ||||  ||  | |||||||||    
T  52653522 tttgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaa 52653621  T
Q  162 ccattcgtaaacaagctcttttaaaaagtggtttctggtcactaaaagacacaaggttttctataaataaagacactttgga 243  Q
    |||||| | ||||| ||||||||||  || || |||  |||| ||| |||||||| || |||||| | ||||||||||||||    
T  52653622 ccattcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttctctatagacaaagacactttgga 52653703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 20251407 - 20251501
Alignment:
Q  303 aatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaat 397  Q
    |||||| ||||||| ||| |||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||||  | |||||||||    
T  20251407 aatactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaat 20251501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 24391833 - 24391915
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgtt 387  Q
    ||||| ||||||||||| |||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  24391833 atactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtt 24391915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 47078155 - 47078078
Alignment:
Q  303 aatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcg 380  Q
    |||||| ||||||||||| |||| | ||||| |||||||||||| ||||||||||||||| ||||||| |||||||||    
T  47078155 aatactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattgatcg 47078078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 430
Target Start/End: Complemental strand, 48779972 - 48779852
Alignment:
Q  310 aatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacg 409  Q
    |||||||| |||||||||||||||||||| | ||| | ||| ||||||||||| ||||||||||||||| |||| | | | ||||||| |  ||||||||    
T  48779972 aatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtcacg 48779873  T
Q  410 tccaggatttcaaaatatcct 430  Q
    || | ||||||| | ||||||    
T  48779872 tcaatgatttcatagtatcct 48779852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 27538213 - 27538132
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgata 383  Q
    ||||||| |||||||||||| |||||||| ||||  ||||||||| ||| ||||| ||||| |||||  |||||||||||||    
T  27538213 taatactaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaacggtcattgatcgata 27538132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 24129463 - 24129391
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcat 374  Q
    ||||||| |||| |||||| ||||||||||||||||  ||||||| ||| ||||||||| | |||||||||||    
T  24129463 taatactaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaactatcat 24129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 36202882 - 36203045
Alignment:
Q  80 aaaatatatttaaaaaattgcagtcgttaaatagagacattatagagaagaggtgtaatgcttgaagatcaaagcaatgtaaccattcgtaaacaagctc 179  Q
    ||||||||||| |||| ||||| | |||||| |||||| || ||||||| |||||||||||||||  ||  || |||||||||||||| | ||||| |||    
T  36202882 aaaatatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaactc 36202981  T
Q  180 ttttaaaaagtggtttctggtcactaaaagacacaaggttttctataaataaagacactttgga 243  Q
    |||||||  ||  |||||  |||| ||| |||| ||| || |||||||||| ||||||||||||    
T  36202982 ttttaaagggttatttctcttcaccaaatgacataagtttctctataaatagagacactttgga 36203045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 9080752 - 9080677
Alignment:
Q  322 ttttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaat 397  Q
    ||||||||||| |||||||| |||| | ||||||||||| | ||||||| |||||||| |||||||  ||||||||    
T  9080752 ttttctctagtacacgagagcaattgagagaactttattttgtaaactaccattgatctatacgtttaatgtgaat 9080677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 29006483 - 29006546
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaa 367  Q
    ||||| |||||||| || |||| |||||||||||||| || || ||||||||||||||| ||||    
T  29006483 atactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaa 29006546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 9851563 - 9851498
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaa 367  Q
    ||||||| ||||| ||||| ||||||||||||||| ||||||  | ||| ||||||||||| ||||    
T  9851563 taatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaa 9851498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 15205361 - 15205434
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcatt 375  Q
    ||||||| ||||||| | | |||||| ||||| || ||||||||| |||  |||||||||| ||||||||||||    
T  15205361 taatactaaatcattgtatcttttctttagtgaacaagagaaattaacatgactttattctctaaactatcatt 15205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 29006309 - 29006418
Alignment:
Q  151 aagcaatgtaaccattcgtaaacaagctcttttaaaaagtggtttctggtcactaaaagacacaaggttttctataaataaagacactttggaacca-aa 249  Q
    ||||||||||||||||| | |||||  |||||||||  || |||||   |||| ||| |||| ||| || |||||||||| ||||||||| ||| || ||    
T  29006309 aagcaatgtaaccattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttctctataaatagagacactttagaagcagaa 29006408  T
Q  250 caaagataga 259  Q
    ||||||||||    
T  29006409 caaagataga 29006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 14219006 - 14218911
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaat 397  Q
    ||||||| ||||||||||| ||||||||||||||||||  ||||| | ||||||||||| | ||||||||||||||| |||||||| | |||||||    
T  14219006 taatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaat 14218911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 34681211 - 34681128
Alignment:
Q  314 attctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaat 397  Q
    ||||||| |||||||| ||| |||||||||||| ||| |||||||||   |||||||||||||||||||||| | |||||||||    
T  34681211 attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaat 34681128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 38327501 - 38327393
Alignment:
Q  310 aatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacg 409  Q
    ||||||||| || |||||||| |||| ||||||||||  || ||||||||| | |||| || ||||||||||| |||| | ||||||| | |||||||||    
T  38327501 aatcattctatactttctctactgca-gagagaaattgccaaaactttattatgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacg 38327403  T
Q  410 tccaggattt 419  Q
    || |||||||    
T  38327402 tcaaggattt 38327393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 404
Target Start/End: Complemental strand, 28696200 - 28696104
Alignment:
Q  308 tgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataag 404  Q
    ||||||||||||| ||||||| || |||||||  ||||| |||||||||||||||||||| ||||||||||| ||||| | | ||||||| ||||||    
T  28696200 tgaatcattctttcttttctccagggcacgaggaaaattgacagaactttattctataaattatcattgatcaatacgcttggtgtgaatgtataag 28696104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 12729389 - 12729455
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaacta 370  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  12729389 atactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaacta 12729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 12729137 - 12729274
Alignment:
Q  60 tatttgtgtgaaaattttccaaaatatatttaaaaaattgcagtcgttaaatagagacattatagagaagaggtgtaatgcttgaagatcaaagcaatgt 159  Q
    |||||||| || || ||||||||||||||||  ||| ||||| | ||||||||||||| || ||||||| |||||||||||| ||  ||  ||||||| |    
T  12729137 tatttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaatat 12729236  T
Q  160 aaccattcgtaaacaagctcttttaaaaagtggtttct 197  Q
    |||||||| | | ||| ||||| |||| ||| ||||||    
T  12729237 aaccattcatgagcaaactcttctaaagagttgtttct 12729274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 10085905 - 10085847
Alignment:
Q  320 tattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgat 378  Q
    |||||||||||||||| ||||| ||   | |||||||||||||||||||||||||||||    
T  10085905 tattttctctagtgcaagagagtaaacaagagaactttattctataaactatcattgat 10085847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 433
Target Start/End: Original strand, 44729085 - 44729204
Alignment:
Q  312 tcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataagtcacgtc 411  Q
    |||||||||  |||| ||||||||||||||| ||| |||  |||  ||||| |||||||||||||||||||||| | | | ||||| |  ||||||||||    
T  44729085 tcattctttcatttccctagtgcacgagagagattgaca--actacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtc 44729182  T
Q  412 caggatttcaaaatatcctaaa 433  Q
     |||||| |||  |||||||||    
T  44729183 aaggattccaatgtatcctaaa 44729204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 14546398 - 14546317
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgata 383  Q
    ||||||| ||||||||||| ||||||||| || |  ||||||||| ||| ||||||| | | |||| || ||||||||||||    
T  14546398 taatactaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata 14546317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 24870414 - 24870497
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacg 385  Q
    ||||||| ||| | ||||| ||||||||||||||||||| ||||| | ||||||||||| | |||||||||||||||| |||||    
T  24870414 taatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacg 24870497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 20463991 - 20464072
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgata 383  Q
    ||||||| ||||||| |||| || ||||| || |||||||||||| |||||| |||||| || |||| ||||||||||||||    
T  20463991 taatactaaatcattatttacttactctaatgtacgagagaaattgacagaaatttattttacaaacaatcattgatcgata 20464072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 383
Target Start/End: Original strand, 1840661 - 1840728
Alignment:
Q  316 tctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgata 383  Q
    ||||| ||||||| | |||| |||||||||| ||||| ||||||| | ||||||||||||||||||||    
T  1840661 tctttcttttctcaaatgcatgagagaaattgacagatctttattatgtaaactatcattgatcgata 1840728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 11931951 - 11932025
Alignment:
Q  302 taatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattg 376  Q
    |||||||  |||||||||| |||| ||||||||||||||||| || |||||| |||||||||||||||| |||||    
T  11931951 taatactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattg 11932025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 28612264 - 28612150
Alignment:
Q  304 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 403  Q
    ||||| ||||||||||| || ||||||||||||||| | |||| ||||||| || || | || |||| |||||| ||||| | | | ||||||| || ||    
T  28612264 atactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgtacaa 28612165  T
Q  404 gtcacgtccaggatt 418  Q
    |||||||| ||||||    
T  28612164 gtcacgtcaaggatt 28612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 28072858 - 28072914
Alignment:
Q  322 ttttctctagtgcacgagagaaatttacagaactttattctataaactatcattgat 378  Q
    ||||||||||| |||||| | |||| | ||||| |||||||||||| ||||||||||    
T  28072858 ttttctctagtacacgagtgtaattgagagaacattattctataaaatatcattgat 28072914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 217757 - 217827
Alignment:
Q  314 attctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatac 384  Q
    ||||||| ||||||||||| |||||||||||||  |||||| ||||| | ||||||| |||||||||||||    
T  217757 attctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatac 217827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University