View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_10 (Length: 493)
Name: NF1258_low_10
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 152 - 367
Target Start/End: Complemental strand, 47933218 - 47933002
Alignment:
| Q |
152 |
taagttattgttggttcacggtatgataaagttgacctccataatccaatcattttttaaaatggtaaaacattttaaattnnnnnnnt-gaataaggtg |
250 |
Q |
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| T |
47933218 |
taagttgttgttggttcacggtaagataaagttgacctccataatccaatcattttttaaaatgattaaacattttaaattaaaaaaattgaataagatt |
47933119 |
T |
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| Q |
251 |
accacctacaatattggtctaccttaatcatttgtggttaaagttaaccggaagatatcaaattaatctacgaaaacatttttgggtaaccaaaacataa |
350 |
Q |
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| T |
47933118 |
gccatctacaatattggtccaccttaatcatttgtggttaaagttaaccgtaagagatcaaactaactgacgaaaacatttttgggtaaccaaaacataa |
47933019 |
T |
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| Q |
351 |
gtttgactagttatgcg |
367 |
Q |
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| T |
47933018 |
gtttgactaattatgcg |
47933002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47933366 - 47933260
Alignment:
| Q |
1 |
cagaatatacgcggaagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttttcttcctctgggttgcttatgagtggcgatgaaggtgacg |
100 |
Q |
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| T |
47933366 |
cagaatatacgcg-aagtaatgaccatcagaaaaatacatgattcaaaccctgtaatttttcttcctctaggttgtttatgagtggtgatgaaggtgacg |
47933268 |
T |
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| Q |
101 |
ttgaatat |
108 |
Q |
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| T |
47933267 |
ttgaatat |
47933260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 47932941 - 47932880
Alignment:
| Q |
428 |
gactaacgttaaataagagtcagcaaaatcttttgagtaataaatatatatattcttggaca |
489 |
Q |
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| T |
47932941 |
gactaatgttaaataagagtcagcaaagtcttttgagccataaatatatatatttttggaca |
47932880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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