View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_12 (Length: 463)
Name: NF1258_low_12
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 455
Target Start/End: Original strand, 31207665 - 31208077
Alignment:
| Q |
30 |
gctttcttgttttgcaagtgaatatttaaaacggtttcttcccttgtaattttacaacatatactacaacattcaatatgttacaataatgttgttttta |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31207665 |
gctttcttgttttgcaagtgaatatttaaaacggtttcttcccttgtaattttacaacatatactacaacattcaatatgttacaataacgttgttttta |
31207764 |
T |
|
| Q |
130 |
taacaatgaatttcatagcagagcacctcaaaatcgatgcctcctttgctataaaatttgcacaaaatttttgttctttaagatatcatgctacaatgta |
229 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31207765 |
taacaatggatttcatagcagagcacctcaaaattgatgtctcctttgctataaaatttgcacaaaatttttgttctttaagatattatgctac------ |
31207858 |
T |
|
| Q |
230 |
gtgttactattctcatttaaaacatccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttcaacgactt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31207859 |
-------tattctcatttaaaacatccctaatattaatgatgtaagtagcataagcgtcttagttatgatcacgatcatcagtaaacaattcaatgactt |
31207951 |
T |
|
| Q |
330 |
tcaagcaatcactctaagataattttgttatagcttttgttatgacaaaaatcaagacacatgcatctgtataacacacaactaggccaacaatgtatca |
429 |
Q |
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|||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31207952 |
tcaaacaatcactcttagataatcttgttatagcttttgttatgacaaaaatcaagacacatgcatctgtataacacacaactaggccaacaatgtatca |
31208051 |
T |
|
| Q |
430 |
cctccaattttatagtgagaataatc |
455 |
Q |
| |
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||||||||||||||||||||| |||| |
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| T |
31208052 |
cctccaattttatagtgagaaaaatc |
31208077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 33460190 - 33460351
Alignment:
| Q |
223 |
caatgtagtgttactattctcatttaaaacatccctaatattaatg-atgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttc |
321 |
Q |
| |
|
|||||||||||||| ||| ||| | || |||| ||||||| || | |||| ||||| ||||| ||| || |||||||||||||| || || ||| || |
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| T |
33460190 |
caatgtagtgttaccatttccatgtgaagcatctctaatataaaaggatgttagtagtataagtgtgcaaggtatgatcacgatcaacaacaatcaggtc |
33460289 |
T |
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| Q |
322 |
aacgactttcaagcaatcactctaa--gataattttgttatagcttttgttatgacaaaaat |
381 |
Q |
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||| ||||||||||||||||||||| ||||| | |||||||| |||||| |||||||||| |
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| T |
33460290 |
aaccactttcaagcaatcactctaacgaataatgtggttatagcctttgttgtgacaaaaat |
33460351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 31477943 - 31477975
Alignment:
| Q |
312 |
taaacagttcaacgactttcaagcaatcactct |
344 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
31477943 |
taaatagttcaacgactttcaagcaatcactct |
31477975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 344
Target Start/End: Complemental strand, 15243538 - 15243436
Alignment:
| Q |
242 |
tcatttaaaacatccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttcaacgactttcaagcaatcac |
341 |
Q |
| |
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|||| ||||||||| ||||||| || ||||| ||||||||||| ||| || |||||||| || ||||| ||| ||| ||||| |||| || ||||||| |
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| T |
15243538 |
tcatgtaaaacatctctaatatgaaggatgtgagtagcataagtgtgcaaggtatgatcatgaccatcaataatcaggtcaactacttcaaaacaatcac |
15243439 |
T |
|
| Q |
342 |
tct |
344 |
Q |
| |
|
||| |
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|
| T |
15243438 |
tct |
15243436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 47924340 - 47924442
Alignment:
| Q |
242 |
tcatttaaaacatccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttcaacgactttcaagcaatcac |
341 |
Q |
| |
|
|||| ||||||||| | ||||| || ||||| ||||||||||| ||| || |||||||| |||||||| ||| ||| ||||| ||| ||| ||||||| |
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|
| T |
47924340 |
tcatgtaaaacatctcgaatatgaaggatgtcagtagcataagtgtgcaaggtatgatcatgatcatcaataatcaggtcaactgcttccaaacaatcac |
47924439 |
T |
|
| Q |
342 |
tct |
344 |
Q |
| |
|
||| |
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|
| T |
47924440 |
tct |
47924442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 41940620 - 41940717
Alignment:
| Q |
247 |
taaaacatccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttcaacgactttcaagcaatcactct |
344 |
Q |
| |
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||||||||| ||||||| || ||||| |||||||||| ||| || ||||||||||| | ||| ||| ||| ||||| ||||||| |||||||||| |
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| T |
41940620 |
taaaacatctctaatatgaaggatgtcggtagcataagtgtgcaaggtatgatcacgaccgtcaataatcaggtcaactgctttcaaacaatcactct |
41940717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 4653724 - 4653638
Alignment:
| Q |
258 |
taatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatcagtaaacagttcaacgactttcaagcaatcactct |
344 |
Q |
| |
|
|||||| || ||||| ||||||||||| |||| || ||||||||||| ||||| ||| ||| ||||| ||| ||| |||||||||| |
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| T |
4653724 |
taatatgaaagatgttagtagcataagtgtgtaaggtatgatcacgaccatcaataatcaggtcaactgcttccaaacaatcactct |
4653638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 6571107 - 6571159
Alignment:
| Q |
252 |
catccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacga |
304 |
Q |
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|||| ||||||| || ||||| ||||||||||| |||| |||||||||||||| |
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| T |
6571107 |
catctctaatatgaaggatgtcagtagcataagtgtgtaagttatgatcacga |
6571159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 44440481 - 44440413
Alignment:
| Q |
242 |
tcatttaaaacatccctaatattaatgatgtaagtagcataagcgtgttagttatgatcacgatcatca |
310 |
Q |
| |
|
|||| ||||||||| ||||||| || ||||| ||||||||||| ||| || ||||||||||| ||||| |
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|
| T |
44440481 |
tcatgtaaaacatctctaatatgaaggatgttagtagcataagtgtgcaaggtatgatcacgaccatca |
44440413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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