View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1258_low_13 (Length: 455)
Name: NF1258_low_13
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_13 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 167 - 455
Target Start/End: Complemental strand, 202700 - 202412
Alignment:
| Q |
167 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202700 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat |
202601 |
T |
|
| Q |
267 |
aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaa |
366 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
202600 |
caaaacaagcaatatcaaacagctaaataatattctcttacacagagcatcaagtaaaaggttcaatcatcacaaagatcatcaaatgtattggagcaaa |
202501 |
T |
|
| Q |
367 |
acttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
455 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202500 |
acttaatacttagaaaagaaaagatcaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
202412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 250 - 455
Target Start/End: Original strand, 206482 - 206688
Alignment:
| Q |
250 |
atacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatc |
349 |
Q |
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|||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
206482 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaagtaaaaggttcaattataacaaagatcatt |
206581 |
T |
|
| Q |
350 |
-aaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaa |
448 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
206582 |
taaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcaagcaaagatttcctcacacaataaacagggatgggaaaa |
206681 |
T |
|
| Q |
449 |
tggtaaa |
455 |
Q |
| |
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|||||| |
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| T |
206682 |
cggtaaa |
206688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 202858 - 202737
Alignment:
| Q |
12 |
atgaaaatgataaagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
202858 |
atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaactttagaatttagaatcaaacatatt |
202759 |
T |
|
| Q |
112 |
tccttccttaatttagaatcaa |
133 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
202758 |
tccttccttaatttagaatcaa |
202737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 167 - 455
Target Start/End: Original strand, 6908287 - 6908574
Alignment:
| Q |
167 |
ctcttacacacagaatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat |
266 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908287 |
ctcttacacacataatcaaactaatattcaaaatcaactatgcttcaatcaatgaagcatagttggatcaaagtttcggttggatacacgggtataccat |
6908386 |
T |
|
| Q |
267 |
aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaa |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6908387 |
aaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaagttcaattatcacaaagatcatcaaatgtattggagcaaa |
6908486 |
T |
|
| Q |
367 |
acttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
455 |
Q |
| |
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|| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908487 |
ac-taatacttagaaaagaaaagatcaaaaacaacatgtcttgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
6908574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 218 - 455
Target Start/End: Original strand, 44924311 - 44924547
Alignment:
| Q |
218 |
atgaagcatagttggatcaaagtttcggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44924311 |
atgaagcatagttggatcaaagtttcggttggatacacaggtataccatcaaaataagcaatatcaaacagctaaataatattctcttacacgcagcatc |
44924410 |
T |
|
| Q |
318 |
aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
44924411 |
aagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaatacttagaaaagaaaggataaaaaacaacatgtctcgagcaaaga |
44924510 |
T |
|
| Q |
418 |
tttcctcacacaataaacagggatgggaaaatggtaaa |
455 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
44924511 |
tttcctcacacaataaacagggat-ggaaaatggtaaa |
44924547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 250 - 410
Target Start/End: Complemental strand, 6901855 - 6901694
Alignment:
| Q |
250 |
atacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatca-t |
348 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| | | |
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|
| T |
6901855 |
atacacggatataccatcaaaacatgcaatatcaaactgctaaataatattctcttacacacaccatcaggtaaaaggttcaattataacaaagataatt |
6901756 |
T |
|
| Q |
349 |
caaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
6901755 |
caaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgtctcga |
6901694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 6908120 - 6908223
Alignment:
| Q |
12 |
atgaaaatgataaagtctccattaatccaaaacacaagctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908120 |
atgaaaatgataaagtctccattaatccaaaacacaggctcaatcaatgaaagattcaaaatcaaattttacaacattagaatttagaatcaaacatatt |
6908219 |
T |
|
| Q |
112 |
tcct |
115 |
Q |
| |
|
|||| |
|
|
| T |
6908220 |
tcct |
6908223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 6908225 - 6908253
Alignment:
| Q |
105 |
acatatttccttccttaatttagaatcaa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6908225 |
acatatttccttccttaatttagaatcaa |
6908253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 275 - 455
Target Start/End: Complemental strand, 29514790 - 29514610
Alignment:
| Q |
275 |
gcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaagatcatcaaatgtattggagcaaaacttaata |
374 |
Q |
| |
|
|||| ||||||| |||||||||||| ||| |||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
29514790 |
gcaaaatcaaactgctaaataatatactcatacaaactccattaagtaaaaggttcaattatcataaagatcatcaaatgtattggagcaaaactctata |
29514691 |
T |
|
| Q |
375 |
cttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
455 |
Q |
| |
|
||| ||||||||||| | ||||| ||||| |||||||||||||||| ||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
29514690 |
cttggaaaagaaaagctcaaaaagaacatctctcgagcaaagatttactcgcacaataaacaaggataggaaaatggtaaa |
29514610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 448
Target Start/End: Complemental strand, 43626417 - 43626320
Alignment:
| Q |
352 |
atgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctc-gagcaaagatttcctcacacaataaacagggatgggaaaa |
448 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||| ||| ||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
43626417 |
atgtattggagcaaaacttaatatttggaaaagaagagataaaaaacaacacgtctctgagaaaagatttccttacacaataaacaaggatgagaaaa |
43626320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 43632354 - 43632255
Alignment:
| Q |
244 |
ggttggatacacgggtataccataaaaacaagcaatatcaaacagctaaataatattctcttacacacagcatcaagtaaaaggttcaattatcacaaag |
343 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||| ||||||| ||||| || | |||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
43632354 |
ggttggatacacgggtataccatcaaaatatgcaaaatcaaactgctaactatt-----cttacatacaacatcaagtaaaaggttcaattatcacaaag |
43632260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 43997909 - 43997968
Alignment:
| Q |
397 |
acaacatgtctc-gagcaaagatttcctcacacaataaacagggatgggaaaatggtaaa |
455 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43997909 |
acaacacgtctctgagaaaagatttcctcacacaataaacaaggatgggaaaatggtaaa |
43997968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 43997814 - 43997903
Alignment:
| Q |
218 |
atgaagcatagttggatcaaagtttcggttgg----atacacggg-tataccataaaaacaagcaatatcaaacagctaaataatattct |
302 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||||||||| |||||||| |||| | |||| ||||||| ||||||||||||||| |
|
|
| T |
43997814 |
atgaagcatagttgattcaaagttttggttggttggatacacggggtataccatcaaaatatgcaaaatcaaactgctaaataatattct |
43997903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 348 - 455
Target Start/End: Complemental strand, 24653035 - 24652928
Alignment:
| Q |
348 |
tcaaatgtattggagcaaaacttaatacttagaaaagaaaagattaaaaacaacatgtctcgagcaaagatttcctcacacaataaacagggatgggaaa |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24653035 |
tcaaatgtattggagcaaaacttaatacttggaaaagaaaagatcaaaaacaacatgttttgagcaaagatttcctcacacaataaacagggatgggaaa |
24652936 |
T |
|
| Q |
448 |
atggtaaa |
455 |
Q |
| |
|
| |||||| |
|
|
| T |
24652935 |
acggtaaa |
24652928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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