View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_14 (Length: 442)
Name: NF1258_low_14
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 31533066 - 31533467
Alignment:
| Q |
12 |
atgaataatgttggtgcagctttaacctcattagctacgtaaatgtcaagcattgtgagagataagagaacaaagaaaaagactgaagcataattaatag |
111 |
Q |
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| T |
31533066 |
atgaataatgttggtgcagctttaacctcattagctacgtaaatgtcaagcattgtgagagataagagaacaaagaaaaagactgaagcataattaattg |
31533165 |
T |
|
| Q |
112 |
aaaaattattgcttgatgtcattttatgtcccttattgtagtagaatctcacacaacaatttctataaactcttacacttaatgcaaaacaccttgcatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31533166 |
aaaaattattgcttgatgtcattttatgtcccttattgtagtagaatctcacacaacaatttctataacctcttacacttaatgcaaaacaccttgcatg |
31533265 |
T |
|
| Q |
212 |
tgcttatacttatataaacatttatacgcataaaaagtaactaaaaatgcaacaatgtagtttttgtagcattgccccnnnnnnnnnnnnnnnnnnnnnn |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31533266 |
tgcttatacttatataaacatttatacgcataaaaagtaactaaaaatgcaacaatgtagtttttgtagcattgtcccaataaataaataaataataaaa |
31533365 |
T |
|
| Q |
312 |
nttataagattatagtaacaaaggtatcaacatggccgaccattgactgctcttgtaataatcagcaagaaccgatcaaagaagaatcttcttagtatat |
411 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31533366 |
tttataagattacagtaacaaaggtatcaacatggccgaccattgactgctcttgtaataatcagcaagaaccgatcaaagaagaatcttcttagtatat |
31533465 |
T |
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| Q |
412 |
at |
413 |
Q |
| |
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|| |
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| T |
31533466 |
at |
31533467 |
T |
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