View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_15 (Length: 438)
Name: NF1258_low_15
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 38548816 - 38548401
Alignment:
| Q |
16 |
aaatatcacgttagaaatcaataggctcggtcactaatctatttgttaacacacatgtgctttgaatttaacgttggacttgaaatgtatgtttttggag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38548816 |
aaatatcacgttagaaatcaataggctcggtcactaatctatttgttaacacacatgtgctttgaatttaacgttggacttgaaatgtatgtttttggag |
38548717 |
T |
|
| Q |
116 |
agcaatttttgaagcatatagagcctttgtttgaacaagtcaatcttgaccacatgcatttggaaaatatgtgactaactaatagtaaacattcgtagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38548716 |
agcaatttttgaagcatatagagcctttgtttgaacaagtcaatcttgaccacatgcatttggaaaatatgtcactaactaatagtaaacattcgtagta |
38548617 |
T |
|
| Q |
216 |
aagtnnnnnnnnnnnnctaatagtaaactttcaagtttcaatcttgattacattcttttgaacaagtcaatcttgactacatgtattgttatatgattaa |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38548616 |
aagtaaaaaaagaaat-taatagtaaactttcaagtttcaatcttgattacattcttttgaacaagtcaatcttgactacatgtatggttatatgattaa |
38548518 |
T |
|
| Q |
316 |
aatttactcctgttaggactttgggcatacatnnnnnnngcacgggcgtgagtattttggatcgggatttagacgagaataatcccctcaagtgacatga |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38548517 |
aatttactcctgttaggactttgggcatacataaaaaaagcacgggcgtgcgtattttggatcgggatttaaacgagaataatcccctcaagtgacatga |
38548418 |
T |
|
| Q |
416 |
gtgaatagtataatcta |
432 |
Q |
| |
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|||||||||| |||||| |
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| T |
38548417 |
gtgaatagtagaatcta |
38548401 |
T |
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