View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1258_low_16 (Length: 437)
Name: NF1258_low_16
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 120 - 405
Target Start/End: Original strand, 13853311 - 13853597
Alignment:
| Q |
120 |
cataagcatgacatgacatattggaaagccaagttgcttcatcatgaatattatggtatcacactatgttatgaatttgcaatagcataaaaactggggg |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13853311 |
cataagcatgacatgacatattggaaaaccaagttgcttaatcatgaatattatggg------------tatgaatttgcaatagcataaaaactggggg |
13853398 |
T |
|
| Q |
220 |
aatgtgccgagcaatgctgcaacattttctacttacttgtaaataaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcat |
319 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853399 |
aatgtgccaagcaatgctgcaacattttcttcttacttgtaaattaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcat |
13853498 |
T |
|
| Q |
320 |
tcaacagaagaaagattaagaaaaacagatacatgatgc-------------agaagggaatcatacaagtaaagaatctccccattcttaacagtaca |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853499 |
tcaacagaagaaagattaagaaaaacagatacatgatgcaatgccaaggaaaagaagggaatcatacaagtaaagaatctccccattcttaacagtaca |
13853597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 125 - 408
Target Start/End: Complemental strand, 10220663 - 10220372
Alignment:
| Q |
125 |
gcatgacatgacatattggaaagccaagttgcttcatcatgaatattatggtatcacactatgttatgaatttgcaatagcataaaaactgggggaatgt |
224 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10220663 |
gcatgatatgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactgggggaatgc |
10220564 |
T |
|
| Q |
225 |
gccgagcaatgctgcaacattttctacttacttgtaaataaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcattcaac |
324 |
Q |
| |
|
||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
10220563 |
gccatgcaatgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaac |
10220464 |
T |
|
| Q |
325 |
agaagaaagattaagaaaaacagatacatgatgc--------agaagggaatcatacaagtaaagaatctccccattcttaacagtacactc |
408 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10220463 |
agaagaaagatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactc |
10220372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 13853227 - 13853294
Alignment:
| Q |
71 |
tttcttattaacattggatatggaccagaaaa-aggaggattgatccttacataagcatgacatgaca |
137 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13853227 |
tttcttattaacattggatatggacaagaaaagaggaggattgatccttacataagcatgacatgaca |
13853294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 13853139 - 13853198
Alignment:
| Q |
10 |
tcataggagatcggtaatcaataggttgtaaaaagttgaaataagtatacttaatgttaa |
69 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13853139 |
tcataggagatccgtaatcaataggttgtaaaaagttgaaataagcatacttaatgttaa |
13853198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 10221993 - 10221940
Alignment:
| Q |
13 |
taggagatcggtaatcaataggttgtaaaaagttgaaataagtatacttaatgt |
66 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
10221993 |
taggagatcggtaatcaatagattgtaaaaagttgaaataagcatacttaatgt |
10221940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 10221897 - 10221843
Alignment:
| Q |
68 |
aattttcttattaacattggatatggaccagaaaa-aggaggattgatccttaca |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
10221897 |
aattttcttattaacattggatattgaccagaaaagaggaggattgatccttaca |
10221843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University