View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_17 (Length: 434)
Name: NF1258_low_17
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 165 - 406
Target Start/End: Complemental strand, 10262289 - 10262050
Alignment:
| Q |
165 |
gatctactttacagttaaaaattccatggcagcttctaataaccaagactttccaacgttaacatcgactaagaggctcttttgaatattgccccaattt |
264 |
Q |
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| T |
10262289 |
gatctactttacagtttaaaa--ccatggcagcttctaataaccaagactttccaacgttaacatcgactaagaggctcttttgaatattgccccaattt |
10262192 |
T |
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| Q |
265 |
ttctcatccaaaagcaacgtatcctcaacaaattgtaagtgggagacccggatgatgggaattcatttacaaggaaaacccatttgaaatataagctggt |
364 |
Q |
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| T |
10262191 |
ttctcatccaaaagcaacgtatcctcaacaaattgtaagtgggagacccggatgatgggaattcatttacaaggaaaacccatttgaaatataagctggt |
10262092 |
T |
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| Q |
365 |
acgaatttgatcacaaaatatgcaaaacaatacgtgcacaat |
406 |
Q |
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| T |
10262091 |
acgaatttgatcaaaaaatatgcaaaacaatacgtgcacaat |
10262050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 10262464 - 10262320
Alignment:
| Q |
9 |
agcataggcaccataatatagaagtgcattaacaaactaaactacgtcattttactttggacaaaaaatatcattttctttttcttcaaaagtagttagt |
108 |
Q |
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| T |
10262464 |
agcattggcaccataatatagaagtgcattaacaaacta-----cgtcattttactttggacaaaaaatatcattttctttttcttcaaaagtagttagt |
10262370 |
T |
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| Q |
109 |
taaatccatgtctatttaattatgtca--ttttgccacccatcaacacaa |
156 |
Q |
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| T |
10262369 |
taaatccatgtctatttaattatgtcattttttgccacccatcaacacaa |
10262320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 10267755 - 10267690
Alignment:
| Q |
248 |
gaatattgccccaatttttctcatccaaaa--gcaacgtatcctcaacaaattgtaagtgggagac |
311 |
Q |
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| T |
10267755 |
gaatattgccccaacttttctcacccaaaaaagcaaggtatcctcaataaattataagtgggagac |
10267690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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