View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_19 (Length: 430)
Name: NF1258_low_19
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Original strand, 193925 - 194330
Alignment:
| Q |
2 |
gagagatgaatgagattaaaggaaaaatggggtgtgataatgatattgtagagcatgtgttccttgtatgttgtatcgttcccggcgcaaggacacgtga |
101 |
Q |
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| T |
193925 |
gagagatgaatgagattaaagggaaaatggggtgtgataatgatattgtagagcatgtgttccttgtat-------cgttcccggcgcaaggacacgtga |
194017 |
T |
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| Q |
102 |
accctctattgaggctggggaagctgttggcctcaaaaggtttggcagtgactttttgcacaccagaaaagctggggcaaagagatgagaaaagctagag |
201 |
Q |
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| T |
194018 |
accctctattgaggctggggaagctgttggcctcaaaaggtttggcagtgactttttgcacactagaaa-gctggggcaaagagatgagaaaagctagag |
194116 |
T |
|
| Q |
202 |
atttagaagaagagaaggaagttgtgataggaaaaggatttattagatttgaatggtttgaagatggttgggatgagaatgaaccaaaacggcttgactt |
301 |
Q |
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| T |
194117 |
atttagaagaagagaaggaagttgtgataggaaaaggatttattagatttgaatggtttgaagatggttgggatgaggatgaaccaaaacggcttgactt |
194216 |
T |
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| Q |
302 |
ggatgtgtatttgccacagctagagagggttgggaaacaagtcctccctaccataatctcccaacaaaatccacctgtctcatgtttgattaataatcct |
401 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
194217 |
ggatgtgtatttgccacaactagagatggttgggaaacaagtcctccctaccataatctcccaacaaaatccacctgtctcatgtttgattaacaatcct |
194316 |
T |
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| Q |
402 |
ttcattctatgggt |
415 |
Q |
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||||||| |||||| |
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| T |
194317 |
ttcattccatgggt |
194330 |
T |
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