View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_2 (Length: 676)
Name: NF1258_low_2
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Original strand, 33430055 - 33430494
Alignment:
| Q |
13 |
gctgttgctgaataatccctagttgcaagggactctgatgaataattcagttcatctacacttaacttctcctttgaacacacacactttatcatcttcc |
112 |
Q |
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| T |
33430055 |
gctgttgctgaataatccctagttgcaagggactctgatgaataattcagttcatctacacttaacttctcctttgaacacacacactttatcatcttcc |
33430154 |
T |
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| Q |
113 |
tcaattcccttctaatgctaaactttttcttacttatcaaactcttagctctcatactactttcctgaaacatcatcaataaagcatgataacaactttn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33430155 |
tcaattcccttctaatgctaaactttttcttacttatcaaactcttagctctcatgctactttcctgaaacatcatcaataaagcatgataacaacttta |
33430254 |
T |
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| Q |
213 |
nnnnnncatggacactttttgtgcatatgtttgttttgaattacttaacaaaattcaaggtttaaaactatttagtctatctttcgatttaccatgaatt |
312 |
Q |
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| T |
33430255 |
aaaaaacatggacactttttgtgcatatgtttgttttgaattacttaacaaaattcaaggtttaaaactatttagtctatatttcgatttaccgtgaatt |
33430354 |
T |
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| Q |
313 |
tggaaaaatcacggtgacaatgattctaaggctctaaagtgtaacttttatcaaaattacttgactaacggtaattttaacaatctcactatcaatacaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33430355 |
tggaaaaatcacggtgacaatgattctaaggctctagagtgtaacttttatcaaaattacttgactaacggtaattttaacaatctcactatcaatacaa |
33430454 |
T |
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| Q |
413 |
acataacaaaaacaaattaattaactcataaagaatttgg |
452 |
Q |
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| T |
33430455 |
acataacaaaaccaaattaactaactcataaagaatttgg |
33430494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 518 - 647
Target Start/End: Original strand, 33430564 - 33430693
Alignment:
| Q |
518 |
taagaagctataaaactacacctatattatagatactgaattcaatagaggctgctgtaaaagggaaagagaatggtatacaaacctagagttaaatgtt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33430564 |
taagaagctataaaactacacctatattatagatactgaattcaatagaggctgctgtaaaagggaaagagaatggtatacaaacctagagttaaatgtt |
33430663 |
T |
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| Q |
618 |
agaaaaccctttttatagcaatatagaaag |
647 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33430664 |
agaaaaccctttttatagcaatatagaaag |
33430693 |
T |
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