View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_20 (Length: 425)
Name: NF1258_low_20
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 67 - 396
Target Start/End: Complemental strand, 19590625 - 19590296
Alignment:
| Q |
67 |
gctgagacatggtggctggtgatggttgatgctgagacatggtggctggtgatggttgatgctgagacatggcggctggtgatgcttgatgctgagacat |
166 |
Q |
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| T |
19590625 |
gctgcgacgtggcggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgcgacgtggcggctggtgatggttgatgctgcgacat |
19590526 |
T |
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| Q |
167 |
ggtggccggtgatggttgatgctgagacgtaggtaagtgcgtcggtgattgtggcggtggagagttgtttggtggctgtgattgttgttcagatgaagtt |
266 |
Q |
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| T |
19590525 |
ggtggctggtgatggttgatgctgagacgtaggtaagtgcgtcggtgattgtggcagtggagagttgtttggtggcagtgattgttgttcagatgaagtt |
19590426 |
T |
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| Q |
267 |
tgttgtggcggtggagagttgttatgatccatggtgtgatttctcaagagttcaatggtatcttggatttgattatatagtgtgtcagagcttcaattaa |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19590425 |
tgttgtggcggtggagagttgttatgatccatggtgtgatttctcaagaattcaatggtatcttggatttgattatatagtgtgtcagagcttcaataaa |
19590326 |
T |
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| Q |
367 |
ctgactaacggtattttagttagttagtta |
396 |
Q |
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| T |
19590325 |
ctgactaacggtattttagttagttagtta |
19590296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 97 - 396
Target Start/End: Original strand, 19582960 - 19583277
Alignment:
| Q |
97 |
gctgagacatggtggctggtgatggttgatgctgagacatggcggctggtgatgcttgatgctgagacatggtggccggtgatggttgatgctgagacgt |
196 |
Q |
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| T |
19582960 |
gctgcgacgtggcggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgcgacgtggcggctggtgatggttgatgctgcgacgt |
19583059 |
T |
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| Q |
197 |
aggtaagtgcgtcggtgattgtggcggtggagagttgtttggtggctgtgattgttgttcagatgaagtttgttgtggcggtggagagttgttatgatcc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19583060 |
aggtaagtgcgtcggtgattgtggcggtggagagttgtttggtggctgtgattgttgttcaggtgaagtttgttgtggcggtggagagttgttatgatcc |
19583159 |
T |
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| Q |
297 |
atggtgtgatttctcaagagttcaatggtatcttggatttgattatata------------------gtgtgtcagagcttcaattaactgactaacggt |
378 |
Q |
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||||||||||||||||||| |||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
19583160 |
atggtgtgatttctcaagaattcaatggtaacatggatttgattatatatatatatatagtgtgtgtgtgtgtgagagcttcaattaactgactaacggt |
19583259 |
T |
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| Q |
379 |
attttagttagttagtta |
396 |
Q |
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|||||||||||||||||| |
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| T |
19583260 |
attttagttagttagtta |
19583277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 19590653 - 19590498
Alignment:
| Q |
9 |
agcaaaggagagccaggtggttgttgcagctgcgacgtggcggctggtgatgcttgatgctgagacatggtggctggtgatggttgatgctgagacatgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
19590653 |
agcaaaggagagccaggtggttgttgcagctgcgacgtggcggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgcgacgtgg |
19590554 |
T |
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| Q |
109 |
tggctggtgatggttgatgctgagacatggcggctggtgatgcttgatgctgagac |
164 |
Q |
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| T |
19590553 |
cggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgagac |
19590498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 19582932 - 19583053
Alignment:
| Q |
9 |
agcaaaggagagccaggtggttgttgcagctgcgacgtggcggctggtgatgcttgatgctgagacatggtggctggtgatggttgatgctgagacatgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
19582932 |
agcaaaggagagccaggtggttgttgcagctgcgacgtggcggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgcgacgtgg |
19583031 |
T |
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| Q |
109 |
tggctggtgatggttgatgctg |
130 |
Q |
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||||||||||||||||||||| |
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| T |
19583032 |
cggctggtgatggttgatgctg |
19583053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 19582960 - 19583053
Alignment:
| Q |
67 |
gctgagacatggtggctggtgatggttgatgctgagacatggtggctggtgatggttgatgctgagacatggcggctggtgatgcttgatgctg |
160 |
Q |
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| T |
19582960 |
gctgcgacgtggcggctggtgatggttgatgctgcgacatggtggctggtgatggttgatgctgcgacgtggcggctggtgatggttgatgctg |
19583053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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