View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_22 (Length: 423)
Name: NF1258_low_22
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 37430920 - 37431304
Alignment:
| Q |
11 |
cataggagacaaaagtatgaccaaa-gatgccttcttgatagcattccaagggaacacgtacaaacatcaaatattatggacaggaacttcacaattaaa |
109 |
Q |
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| T |
37430920 |
cataggagacaaaagtatgaccaaaagatgccttcctgatagcattccaagggaacac----aaacatcaaatattatggacaggaacttcacaattaaa |
37431015 |
T |
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| Q |
110 |
gctattacaaatgcagaaagaaggcacgtattatta----ctcttaataataataacagatagataagtggatgctcgtgttcctcgtnnnnnnnnnnnn |
205 |
Q |
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| T |
37431016 |
gctattacaaatgcagaaagaaggcacgtattattattaactcttaataataataacagatagataagtggatgctcgtgttcctcgtttattattatat |
37431115 |
T |
|
| Q |
206 |
nnnnnnnnnnctagtaaaaagacgtgcattcgtgtccgtcttactgattttttatcgcattaacgcgtgtaaattataaaccgtattttatataaagaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37431116 |
tatattattactagtaaaaagacgtgcattcgtgtccgtcttactgtttttttatcgcattaacgcgtgtaaattataaactgtattttatataaagaga |
37431215 |
T |
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| Q |
306 |
tatttagtgtacatgtatcattgttatactatataaagaaatatttagaatccattcagaacatcaaaagcaccaaatatggaaatgca |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37431216 |
tatttagtgtacatgtatcattgttatactatataaagaaatatttagaatccattcagaacatcaaaagcaccaaatatggaaatgca |
37431304 |
T |
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