View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_23 (Length: 420)
Name: NF1258_low_23
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 165 - 420
Target Start/End: Original strand, 44000210 - 44000461
Alignment:
| Q |
165 |
acttgctaataagaagatgaaacacgaaatacttatgagtcatttccatggaaacaagataaaatcctagttagacatttcaggaaattgataaaatagc |
264 |
Q |
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| T |
44000210 |
acttgctaataagaagatgaaacacgaaatacttatgagtcatttccatggaaacaagataaaatcctagttagacatttcaggaaattgagaaaatagc |
44000309 |
T |
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| Q |
265 |
tcttgtgataaataatgcaagacaaatatttactttaagagaatctcctttctcattgttaaaaattaaaactaacacaaattttaggaaatgaattaat |
364 |
Q |
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| T |
44000310 |
tcttgtgataaataatgcaagacaaatgtttactttaagagaatctcctttctcattgttaaaaattaaaactaacactaattttaggaaatg----aat |
44000405 |
T |
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| Q |
365 |
atagaaaatatcttcacaaacccttagttttttggtggatgtgaagcagcttacat |
420 |
Q |
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| T |
44000406 |
attgaaaatatcttcacaaacccttagttttttggtggatgtgaagcagcttacat |
44000461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 44000071 - 44000144
Alignment:
| Q |
28 |
taataatatgactggaaaactgattttgactcgtaaaatgcacatgcaaaatgagacaagcgcaacctctttag |
101 |
Q |
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| T |
44000071 |
taataatatgactggaaaactgattttgactcgtaaaatgcacatgcaaaatgagacaagcgcaacctctttag |
44000144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 3719183 - 3719132
Alignment:
| Q |
308 |
tctcctttctcattgttaaaaattaaaactaacacaaattttaggaaatgaa |
359 |
Q |
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| T |
3719183 |
tctcctttttccttgttaataagtaaaactaacacaaattttaggaaatgaa |
3719132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 27803053 - 27803104
Alignment:
| Q |
308 |
tctcctttctcattgttaaaaattaaaactaacacaaattttaggaaatgaa |
359 |
Q |
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| T |
27803053 |
tctcttttctccttgttaacaagtaaaactaacacaagttttaggaaatgaa |
27803104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 9164063 - 9164010
Alignment:
| Q |
306 |
aatctcctttctcattgttaaaaattaaaactaacacaaattttaggaaatgaa |
359 |
Q |
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| T |
9164063 |
aatctcttttctccttgttaataagtaaaactaacacaaattttaggaagtgaa |
9164010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 24985461 - 24985422
Alignment:
| Q |
320 |
ttgttaaaaattaaaactaacacaaattttaggaaatgaa |
359 |
Q |
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| T |
24985461 |
ttgttaaaaagtaaaactaatacaaattttaggaaatgaa |
24985422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 11229153 - 11229107
Alignment:
| Q |
313 |
tttctcattgttaaaaattaaaactaacacaaattttaggaaatgaa |
359 |
Q |
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| T |
11229153 |
tttctccttgtaaacaaataaaactaacacaaattttaggaaatgaa |
11229107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 50084821 - 50084773
Alignment:
| Q |
308 |
tctcctttctcattgttaaaaattaaaactaacacaaattttaggaaat |
356 |
Q |
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| T |
50084821 |
tctcctttctccttgttaacaagtaaaattaatacaaattttaggaaat |
50084773 |
T |
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