View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_24 (Length: 410)
Name: NF1258_low_24
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 35916990 - 35916641
Alignment:
| Q |
30 |
gaaagatggaaacaggatggaacactcagcaattaca--------aatattactcttgtctgtatcatttataaccaactcattccaagtcaaagggtat |
121 |
Q |
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| T |
35916990 |
gaaagatggaaacaggatggaacaatcagcaattacatatttgcaaatattactcttgtctgtatcatttataaccaa----------gtcaaagggtat |
35916901 |
T |
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| Q |
122 |
ggttctaagctaaagaaaaggccaaacttatctactcacatatcagtattacattaacttcaagtttaatcttccacatggtaaggaaattaggccataa |
221 |
Q |
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| T |
35916900 |
g-ttctaagctaaagaaaaggccaaacttatctactcacatatcagtattacattaacttcaaatttaatcttccacatggtaaggaaattaggccataa |
35916802 |
T |
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| Q |
222 |
tacattctaacaatatttcacagctcaaaaatttctatatgaagagaaaaggtaaataaaatgagggggttattttggttagaccattatcctctaacct |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916801 |
tacattctaacaatatttcacagctcaaaaatttctatatgaagagaaaaggtaaataaaatgagggggttattttggttagaccattatcctctaacct |
35916702 |
T |
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| Q |
322 |
aagttggagccnnnnnnnntccccaataatctgagagttagtgaattttaaaccgagcccc |
382 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916701 |
aagttggagccaaaaaaaatccccaataatctgagagttagtgaattttaaaccgagcccc |
35916641 |
T |
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