View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_25 (Length: 403)
Name: NF1258_low_25
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 40005899 - 40006293
Alignment:
| Q |
1 |
taagatcttcagaacannnnnnncgattcttcccttcgtttcagcatcttccgtatttgtttcaacaacaaaatacggacaaggctagaaaatctaaggt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005899 |
taagatcttcagaacagttttttcgattcttcccttcgtttcagcatcttccgtatttgtttcaacaacaaaatacggacaaggctagaaaatctaaggt |
40005998 |
T |
|
| Q |
101 |
tcgaaagtagaacgaactcgaccccaacctatctcaacttcacttcaaagccttggtgaatcaaatcatcaaacaaggaggaatcgaggaaactgttttg |
200 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40005999 |
tcgaaagtagaacgaactcggcctcaacctatctcaacttcacttcaaagccttggtgaatcaaatcatcaaacaaggaggaatcgaggaaactgttctg |
40006098 |
T |
|
| Q |
201 |
aagatctcactagaatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaacctatctcagcctcacttca |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40006099 |
aagatctcactagaatcaaatatggatgaggctacataatccaaggttcgaaagtaggcttccaacgaacccgacctcaacctatctcagcctcacttca |
40006198 |
T |
|
| Q |
301 |
aagccttggtgaagcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatgat |
395 |
Q |
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| T |
40006199 |
aagccttggtgaagcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatgat |
40006293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 40005927 - 40005799
Alignment:
| Q |
181 |
gaatcgaggaaactgttttgaagatctcactagaatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaa |
280 |
Q |
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||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||| ||| |||||||| | || |
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| T |
40005927 |
gaatcgaaaaaactgttctgaagatcttagaagaatcaaatatgcacgaggctacagaatccaaggttcgaaagtagccttacaacgaactcggcc---- |
40005832 |
T |
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| Q |
281 |
cctatctcagcctcacttcaaagccttggtgaagcaaa |
318 |
Q |
| |
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| T |
40005831 |
-----ctcagcctcacttcaaagccttggtgaagcaaa |
40005799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 359
Target Start/End: Original strand, 42150459 - 42150643
Alignment:
| Q |
175 |
aaggaggaatcgaggaaactgttttgaagatctcactagaatcaaatatggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctga |
274 |
Q |
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||||| ||||||| ||||| |||||||||||| | ||||||||| |||||||| | || |||||||| |||||||| | || || || ||| || |
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| T |
42150459 |
aaggaagaatcgaagaaacagttttgaagatccttcaagaatcaaacatggacgacgtcactgaatccaagattcgaaagcaagcctcaaatgaattgga |
42150558 |
T |
|
| Q |
275 |
cctcaacctatctcagcctcacttcaaagccttggtgaagcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacag |
359 |
Q |
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|| |||||||||||||||| |||||||||||| || || |||||||| ||||||||||||| ||||||||| ||| || ||||| |
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| T |
42150559 |
tcttaacctatctcagcctcccttcaaagccttcgtcaaacaaatcatagaagattttcttctacagaagcaacaagaacaacag |
42150643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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