View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1258_low_27 (Length: 370)

Name: NF1258_low_27
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1258_low_27
NF1258_low_27
[»] chr4 (6 HSPs)
chr4 (251-370)||(32183115-32183234)
chr4 (73-186)||(32183299-32183413)
chr4 (72-126)||(15186980-15187033)
chr4 (72-186)||(25641268-25641383)
chr4 (72-129)||(47571570-47571626)
chr4 (77-134)||(16572142-16572198)
[»] chr6 (6 HSPs)
chr6 (251-359)||(15858944-15859052)
chr6 (71-186)||(15859117-15859235)
chr6 (76-186)||(11546788-11546896)
chr6 (72-126)||(33112714-33112767)
chr6 (72-134)||(6575797-6575858)
chr6 (149-186)||(33984776-33984813)
[»] chr1 (7 HSPs)
chr1 (72-186)||(19472820-19472933)
chr1 (72-186)||(12172976-12173087)
chr1 (72-129)||(38548754-38548810)
chr1 (115-186)||(43268645-43268716)
chr1 (72-123)||(28447802-28447852)
chr1 (72-126)||(26990681-26990734)
chr1 (149-186)||(41955963-41956000)
[»] chr8 (5 HSPs)
chr8 (72-186)||(22839273-22839387)
chr8 (71-186)||(38086412-38086527)
chr8 (77-134)||(40930834-40930890)
chr8 (72-134)||(25829264-25829324)
chr8 (251-284)||(38086592-38086625)
[»] chr3 (9 HSPs)
chr3 (72-186)||(31525385-31525496)
chr3 (81-186)||(47820920-47821026)
chr3 (144-186)||(28956968-28957010)
chr3 (78-186)||(28934741-28934845)
chr3 (77-129)||(10454361-10454412)
chr3 (72-126)||(43073045-43073098)
chr3 (72-186)||(9358748-9358860)
chr3 (72-135)||(52076136-52076198)
chr3 (77-135)||(44656229-44656286)
[»] chr7 (10 HSPs)
chr7 (10-55)||(29451041-29451086)
chr7 (76-173)||(30655601-30655697)
chr7 (73-123)||(48894294-48894344)
chr7 (76-184)||(31424775-31424883)
chr7 (72-186)||(46691844-46691959)
chr7 (73-134)||(19471089-19471149)
chr7 (76-134)||(1039066-1039123)
chr7 (149-186)||(33320726-33320763)
chr7 (76-128)||(32679023-32679074)
chr7 (78-134)||(36615808-36615863)
[»] chr5 (3 HSPs)
chr5 (72-124)||(9597753-9597804)
chr5 (72-186)||(23172973-23173085)
chr5 (73-186)||(42241589-42241701)
[»] chr2 (3 HSPs)
chr2 (77-134)||(41419692-41419748)
chr2 (77-129)||(14732344-14732395)
chr2 (149-185)||(41378272-41378308)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 251 - 370
Target Start/End: Complemental strand, 32183234 - 32183115
Alignment:
Q  251 tagaaaatccggaagtgaggccgacatatacatgtgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaa 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32183234 tagaaaatccggaagtgaggccgacatatacatgtgagatgccacaagaatatccctgcctcgccacaaacaacgctcagcctcaccacaagccaccaaa 32183135  T
Q  351 acaggccctggaacaacaac 370  Q
    ||||||||||||||||||||    
T  32183134 acaggccctggaacaacaac 32183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 32183413 - 32183299
Alignment:
Q  73 aatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgg-agnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||        ||||||||||||||||||||||||||||    
T  32183413 aatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccataca 32183314  T
Q  172 aacaccggctcgaac 186  Q
    |||||||||||||||    
T  32183313 aacaccggctcgaac 32183299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 15186980 - 15187033
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagct 126  Q
    ||||||||||||||||||||||| |||||||| |||||||  |||||||||||||    
T  15186980 gaatcggcaaaatattattaacc-aacaagcccgtgcaagatgcactaataagct 15187033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 25641268 - 25641383
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnn--caaagaaggggaaatcggttgccata 169  Q
    ||||||||||||| ||||||||||| |||||| |||||||  ||||||| ||||| || |||||          ||||||||||||||| ||||||||||    
T  25641268 gaatcggcaaaatgttattaaccaa-caagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccata 25641366  T
Q  170 caaacaccggctcgaac 186  Q
    | |||| ||||||||||    
T  25641367 ctaacatcggctcgaac 25641383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 47571570 - 47571626
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcgg 129  Q
    ||||||||||||||||||||||| ||||| || ||| |||| ||||||||||||||||    
T  47571570 gaatcggcaaaatattattaacc-aacaaacccgtggaaggagcactaataagctcgg 47571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 16572198 - 16572142
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    |||||||||||||||||| |||||||| |||| ||  |||||||||||||||| ||||    
T  16572198 ggcaaaatattattaacc-aacaagcccgtgcgagatgcactaataagctcgggtgga 16572142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 15859052 - 15858944
Alignment:
Q  251 tagaaaatccggaagtgaggccgacatatacatgtgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaa 350  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  15859052 tagaaaatccggaagtgaggccgacatatacatgtgagattccacaagaatatccctgccttaccacaaacaacgcgcagcctcaccacaagccaccaaa 15858953  T
Q  351 acaggccct 359  Q
    |||||||||    
T  15858952 acaggccct 15858944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 15859235 - 15859117
Alignment:
Q  71 agaatcggcaaaatattattaaccaaa-caagcctgtgcaaggcgcactaataagctcggatggag--nnnnnnnncaaagaaggggaaatcggttgcca 167  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||    
T  15859235 agaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgcca 15859136  T
Q  168 tacaaacaccggctcgaac 186  Q
     ||||||||||||||||||    
T  15859135 aacaaacaccggctcgaac 15859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 11546896 - 11546788
Alignment:
Q  76 cggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatacaaaca 175  Q
    ||||||||||||||||||  | |||||| |||||||  |||||||||||||||| || ||        ||||||||| ||||||||||| ||||||||||    
T  11546896 cggcaaaatattattaactga-caagcccgtgcaagtagcactaataagctcgggtg-agaaaaaaaacaaagaaggagaaatcggttgtcatacaaaca 11546799  T
Q  176 ccggctcgaac 186  Q
    |||||||||||    
T  11546798 ccggctcgaac 11546788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 33112714 - 33112767
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagct 126  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  33112714 gaatcggcaaaatattattaacc-aacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 6575858 - 6575797
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    ||||||||||||||||||||| | |||||||| |||||||  ||||||||||| |||| ||||    
T  6575858 gaatcggcaaaatattattaatc-aacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 33984813 - 33984776
Alignment:
Q  149 aaggggaaatcggttgccatacaaacaccggctcgaac 186  Q
    |||||||||||||||||||||||||||| || ||||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaac 33984776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 19472933 - 19472820
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||        |||||||||||||||| |||||||||||    
T  19472933 gaatcggcaaaatattattaaccaa-caagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccataca 19472835  T
Q  172 aacaccggctcgaac 186  Q
    ||| |||||||||||    
T  19472834 aactccggctcgaac 19472820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 12173087 - 12172976
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    ||||||||||||||||||||||| |||||||| |||||||  ||||||||||||| || ||||         |||| ||||||||||||||||||| |||    
T  12173087 gaatcggcaaaatattattaacc-aacaagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacaca 12172991  T
Q  172 aacaccggctcgaac 186  Q
    |||| | ||||||||    
T  12172990 aacatcagctcgaac 12172976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 38548810 - 38548754
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcgg 129  Q
    ||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||    
T  38548810 gaatcggcaaaatattattaacc-aacaaacccgtgcaagacgcactaataagctcgg 38548754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 43268645 - 43268716
Alignment:
Q  115 cactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatacaaacaccggctcgaac 186  Q
    ||||||||||||||| |||||        |||||||||||||||||||||||  ||||||||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaac 43268716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataa 123  Q
    ||||||||||||||||||||||| |||||||| |||||||  ||||||||||    
T  28447852 gaatcggcaaaatattattaacc-aacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 26990734 - 26990681
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagct 126  Q
    ||||||||||||||||||||||| || ||||| |||||||  |||||||||||||    
T  26990734 gaatcggcaaaatattattaacc-aataagcccgtgcaagaagcactaataagct 26990681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 41955963 - 41956000
Alignment:
Q  149 aaggggaaatcggttgccatacaaacaccggctcgaac 186  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaac 41956000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 22839387 - 22839273
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccata-c 170  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||        |||||||| |||||||||||||||||      
T  22839387 gaatcggcaaaatattattaaccaa-caagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatata 22839289  T
Q  171 aaacaccggctcgaac 186  Q
    ||||| ||||||||||    
T  22839288 aaacatcggctcgaac 22839273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 38086412 - 38086527
Alignment:
Q  71 agaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggag-nnnnnnnncaaagaaggggaaatcggttgccata 169  Q
    |||||| |||||||||||||||||||  ||||| ||||||| ||||||||||||||||| |||||         |||||||||| |||||||||||||||    
T  38086412 agaatcagcaaaatattattaaccaat-aagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccata 38086510  T
Q  170 caaacaccggctcgaac 186  Q
    ||||| | |||||||||    
T  38086511 caaactctggctcgaac 38086527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 40930834 - 40930890
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||||||| ||||    
T  40930834 ggcaaaatattattaaccaa-caagcccgtgcaagaagcactaataagctcgggtgga 40930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 25829264 - 25829324
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    ||||||||||| ||||||||||||| |||||| |||||||  |||||||||||||||| ||||    
T  25829264 gaatcggcaaa-tattattaaccaa-caagcccgtgcaagaagcactaataagctcgggtgga 25829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 38086592 - 38086625
Alignment:
Q  251 tagaaaatccggaagtgaggccgacatatacatg 284  Q
    |||||||||| |||||||||||||||||||||||    
T  38086592 tagaaaatccagaagtgaggccgacatatacatg 38086625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 31525496 - 31525385
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| || ||||         |||| ||||||||||||||||||| |||    
T  31525496 gaatcggcaaaatattattaacc-aacaagcctgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacaca 31525400  T
Q  172 aacaccggctcgaac 186  Q
    |||| ||||||||||    
T  31525399 aacaacggctcgaac 31525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 47821026 - 47820920
Alignment:
Q  81 aaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnn--caaagaaggggaaatcggttgccatacaaacaccg 178  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||          |||||||||||||||||||||||  ||||||||||    
T  47821026 aaatattattaaccaa-caagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccg 47820928  T
Q  179 gctcgaac 186  Q
    ||||||||    
T  47820927 gctcgaac 47820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 28957010 - 28956968
Alignment:
Q  144 caaagaaggggaaatcggttgccatacaaacaccggctcgaac 186  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  28957010 caaagaaggggaaatcggttgccacacaaacaccggctcgaac 28956968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 28934741 - 28934845
Alignment:
Q  78 gcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatacaaacacc 177  Q
    ||||||||||||||||||| |||||| |||||||  |||||||||||||||| |||||         ||| ||||||||||||||||||  |||||||||    
T  28934741 gcaaaatattattaaccaa-caagcccgtgcaagaagcactaataagctcgggtggagaaaaaaca-aaacaaggggaaatcggttgcc--acaaacacc 28934836  T
Q  178 ggctcgaac 186  Q
    |||||||||    
T  28934837 ggctcgaac 28934845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 10454412 - 10454361
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcgg 129  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||||||||||    
T  10454412 ggcaaaatattattaaccaa-caagcccgtgcaaggagcactaataagctcgg 10454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 43073045 - 43073098
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagct 126  Q
    ||||||||||||||||||||||| |||||||| |||||||  |||||||||||||    
T  43073045 gaatcggcaaaatattattaacc-aacaagcccgtgcaagatgcactaataagct 43073098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 9358748 - 9358860
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    |||||||||||||||||||| |||| |||||| |||| ||  | ||||||||||| || |||||        || ||||||||||||||||||||  |||    
T  9358748 gaatcggcaaaatattattacccaa-caagcccgtgcgagaagtactaataagcttgggtggagaaaaaaa-catagaaggggaaatcggttgccgcaca 9358845  T
Q  172 aacaccggctcgaac 186  Q
    |||||||||||||||    
T  9358846 aacaccggctcgaac 9358860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 52076198 - 52076136
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggag 135  Q
    ||||||||||||||||| ||||| |||||||| |||| ||  |||||||||||||||| |||||    
T  52076198 gaatcggcaaaatattactaacc-aacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 44656229 - 44656286
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggag 135  Q
    |||||||||||||||||| |||||||| |||||||  |||| ||||||||||| |||||    
T  44656229 ggcaaaatattattaacc-aacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 29451041 - 29451086
Alignment:
Q  10 aagaatatggacaaaaggtgcagggaaatcagaaagggaaactcca 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29451041 aagaatatggacaaaaggtgcagggaaatcagaaagggaaactcca 29451086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 30655601 - 30655697
Alignment:
Q  76 cggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatacaaa 173  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||         |||| ||||||||||||||||||| |||||    
T  30655601 cggcaaaatattattaaccaa-caagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaa 30655697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 48894294 - 48894344
Alignment:
Q  73 aatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataa 123  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  48894294 aatcagcaaaatattattaaccaaacaagcccgtgtaaggcgcactaataa 48894344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 31424775 - 31424883
Alignment:
Q  76 cggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatac-aaac 174  Q
    ||||||||||||||||||||| ||| || |||||||   |||||||||||| || |||||        ||||||||||||||||||||||||| | ||||    
T  31424775 cggcaaaatattattaaccaa-caaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaac 31424873  T
Q  175 accggctcga 184  Q
    ||||||||||    
T  31424874 accggctcga 31424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 46691844 - 46691959
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggag--nnnnnnnncaaagaaggggaaatcggttgccata 169  Q
    ||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||| |||||          || | ||||||||||||||||||| |    
T  46691844 gaatcggcaaaatattattaacc-aacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccaca 46691942  T
Q  170 caaacaccggctcgaac 186  Q
     ||||||||||||||||    
T  46691943 taaacaccggctcgaac 46691959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 19471089 - 19471149
Alignment:
Q  73 aatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    |||||| ||||||||||||| ||| |||||| |||||||| |||||||||||||||| ||||    
T  19471089 aatcgggaaaatattattaagcaa-caagccggtgcaaggtgcactaataagctcgggtgga 19471149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 1039066 - 1039123
Alignment:
Q  76 cggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    ||||||||||||||||||| | |||||| |||||||  |||||||||||||||| ||||    
T  1039066 cggcaaaatattattaaccga-caagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 33320763 - 33320726
Alignment:
Q  149 aaggggaaatcggttgccatacaaacaccggctcgaac 186  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  33320763 aaggggaaattggttgccttacaaacaccggctcgaac 33320726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 32679074 - 32679023
Alignment:
Q  76 cggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcg 128  Q
    |||| |||| ||||||||||| |||||| ||||||| ||||||||||||||||    
T  32679074 cggctaaattttattaaccaa-caagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 36615808 - 36615863
Alignment:
Q  78 gcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    |||||||||||||| |||| |||||| |||||||  |||||||||||||||| ||||    
T  36615808 gcaaaatattattacccaa-caagcccgtgcaagaagcactaataagctcgggtgga 36615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataag 124  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  9597753 gaatcggcaaaatattattaacc-aacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 23172973 - 23173085
Alignment:
Q  72 gaatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccataca 171  Q
    ||||||||||| ||||||||||||| |||||| |||||||  |||||||||||||||| ||||         |||| |||| |||||| |||||| || |    
T  23172973 gaatcggcaaa-tattattaaccaa-caagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctata 23173070  T
Q  172 aacaccggctcgaac 186  Q
    |||||||||||||||    
T  23173071 aacaccggctcgaac 23173085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 42241589 - 42241701
Alignment:
Q  73 aatcggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatggagnnnnnnnncaaagaaggggaaatcggttgccatacaa 172  Q
    ||||||||||||||||||||||||  ||| | | |||||  |||||||||||||||||||           ||||||||||||||||||| |||||||||    
T  42241589 aatcggcaaaatattattaaccaat-aagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcggtcgccatacaa 42241687  T
Q  173 acaccggctcgaac 186  Q
    || |||||| ||||    
T  42241688 actccggcttgaac 42241701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 41419748 - 41419692
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcggatgga 134  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||||||||| ||||    
T  41419748 ggcaaaatattattaaccaa-caagcccgtgcaagatgcactaataagctcgggtgga 41419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 14732344 - 14732395
Alignment:
Q  77 ggcaaaatattattaaccaaacaagcctgtgcaaggcgcactaataagctcgg 129  Q
    |||||||||||||||||||| |||||| |||| ||| ||||||||||||||||    
T  14732344 ggcaaaatattattaaccaa-caagcccgtgcgaggtgcactaataagctcgg 14732395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 41378272 - 41378308
Alignment:
Q  149 aaggggaaatcggttgccatacaaacaccggctcgaa 185  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  41378272 aaggggaaatcggttgccacacaaactccggctcgaa 41378308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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