View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_28 (Length: 369)
Name: NF1258_low_28
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_28 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 24031375 - 24031714
Alignment:
| Q |
30 |
tgcattatctaatcctttattatgtgtatgtgcagtacaaacttaagtgtttgtttagctatttgtggtgaggcgattagttagatgctacgctgtgtat |
129 |
Q |
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| T |
24031375 |
tgcattatctaatcctttattatgtgtatgtgcagtacaaacttaagtgcttgtttagctatttgtggtgaggcgattagctagatgctacgctgtgtat |
24031474 |
T |
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| Q |
130 |
cttgctttacctatcatatctttgggttgtaacacttatgtttcgatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaact |
229 |
Q |
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| T |
24031475 |
cttgctttacctatcatatttttgggttgtaacacttatgtttcgatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaact |
24031574 |
T |
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| Q |
230 |
taatatgattatggattattatgtaagtgatgtacttttggagatctatatgtgatctatgatgtacttaatgtgtaagtgatgtacttaatgtgtgcat |
329 |
Q |
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| T |
24031575 |
taatatgattatggattattatgtaagtgatgtacttttggagatctatatgtgatctatgatgtacttaatgtgtaagtgatgtacttaatgtgtacat |
24031674 |
T |
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| Q |
330 |
ccgattattatgtgatctaggattacgtaagtgatttcat |
369 |
Q |
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| T |
24031675 |
ccgattattatgtgatctaggattacgtaagtgatttcat |
24031714 |
T |
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Back To:
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Target: scaffold0037 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 14756 - 14877
Alignment:
| Q |
174 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
273 |
Q |
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| T |
14756 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
14855 |
T |
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| Q |
274 |
tctatatgtgatctatgatgta |
295 |
Q |
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| T |
14856 |
tctatatctgatctatgatgta |
14877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 17038114 - 17037993
Alignment:
| Q |
174 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038114 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
17038015 |
T |
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| Q |
274 |
tctatatgtgatctatgatgta |
295 |
Q |
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||||||| |||||||||||||| |
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| T |
17038014 |
tctatatctgatctatgatgta |
17037993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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