View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_36 (Length: 333)
Name: NF1258_low_36
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 32339955 - 32339815
Alignment:
| Q |
55 |
agcaaaggcgaagaggcatgaacataa--ggtttaacaa-caattagggacaccatataacatgaagaaactgaaagcatggatttcacattggcatgaa |
151 |
Q |
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| T |
32339955 |
agcaaaggcgaagcggcatgaacataacaggtttaacaaacaattagggacaacatataacatgaagaaactgaaagcatggatttcacattggcataaa |
32339856 |
T |
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| Q |
152 |
cataacagatttcacactggtttaacaacataacaggtttc |
192 |
Q |
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| T |
32339855 |
cataacaggtttcacactggtttaacaacataacaggtttc |
32339815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 32339801 - 32339748
Alignment:
| Q |
178 |
aacataacaggtttcatattcggttaacaacagagcaggtttcacattgtcatg |
231 |
Q |
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| T |
32339801 |
aacataacaggtttcatattcggttaacaacatagcaggtttcacattgtcatg |
32339748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 32339814 - 32339758
Alignment:
| Q |
137 |
tcacattggcatgaacataacagatttcacactggtttaacaacataacaggtttca |
193 |
Q |
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| T |
32339814 |
tcacattggcatgaacataacaggtttcatattcggttaacaacatagcaggtttca |
32339758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 19390086 - 19390139
Alignment:
| Q |
8 |
ccaacaatatggtcccaatggatgatgccgatacaataatgagtagtagcaaag |
61 |
Q |
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| T |
19390086 |
ccaacaaaatggtcccaatggatgatgccgatgcaataatgagtaggagcaaag |
19390139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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