View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1258_low_37 (Length: 317)
Name: NF1258_low_37
Description: NF1258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1258_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44723907 - 44723666
Alignment:
| Q |
1 |
cacgttgaccttatatttaaactaagccaattcattataattcaatctaacgaggcataagaaataatagaagcacaaaagacgcataaaataaagaaaa |
100 |
Q |
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| T |
44723907 |
cacgttgaccttatatttaaactaagccaattcattataattcaatctaacgaggcataagaaataatagaagcacaaaagacgcataaaataaagaaaa |
44723808 |
T |
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| Q |
101 |
ccatagcagaaaagtcaacagtaaacttcaaacatgcaagaaagttcaaagcaaaagcttttgaagaactcgattgtataaatgatttttgtaatggtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44723807 |
ccatagcagaaaagtcaacagtaaacttcaaacatgcaagaaagttaaaagcaaaagcttttgaagaactcgattgtataaatgatttttgtaatggtaa |
44723708 |
T |
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| Q |
201 |
aactgccaaatttgcataaatgatttttgtaatggtctgtgg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44723707 |
aactgccaaatttgcataaatgatttttgtaatggtctgtgg |
44723666 |
T |
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